View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-11 (Length: 618)
Name: NF1705-Insertion-11
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 618
Target Start/End: Complemental strand, 43989305 - 43988692
Alignment:
| Q |
7 |
aattgacttcataaaatgacagaggcaaaaccaggatcatatcactcactttaaaacaagcaacaaatgacagaggcaaaatcaataacgaacgaagaac |
106 |
Q |
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| T |
43989305 |
aattgactccataaaatgacagaggcaaaaccaggatcatatcactcactttaaaacaagcaacaaatgacacaggcaaaatcaataacgaacgaagaac |
43989206 |
T |
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| Q |
107 |
aacgctaataattgcatagtatatctttttgttatgagttgtatatgttgatgtatgttattagcagaaagatgatgggcgagagaatcggaaccggtca |
206 |
Q |
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| T |
43989205 |
aacgctaataattgcatagtatatctttttgttatgagttgtatatgttgatgtatgttattaacacaaacatgatggactataaaatcagaacctttca |
43989106 |
T |
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| Q |
207 |
cagaatctgttcgttcatgacgacaattgatggattcaaaaattattaatccctacaattaacgacttattcgcgttttgatctcgaaatttagtcaatt |
306 |
Q |
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| T |
43989105 |
caaaatctcttcgttcataaccacaattaatacattcaaaaattattaatccctacaattaaccacttattctcattttgatctctaaatttaatcaatt |
43989006 |
T |
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| Q |
307 |
actatcaatttgatctctgacatgataaaccatgatgaaccagaaaattagaaaaaatataca--ctctgttaaatagattacattttcatctgttccaa |
404 |
Q |
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| T |
43989005 |
actatcaatttgatctctgacatgataaaccatgatgaaccagaaaattagaaaaaatatacactctctgttaactagattacattttcatctgttccaa |
43988906 |
T |
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| Q |
405 |
cataatcaatacaagattgtcttcctatcctcccaacttacatctaaagataacatataaattaacaaaactatactcatcaaagatgcacaaaatctta |
504 |
Q |
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| T |
43988905 |
cataatcaatacaagattgtcttcctatcctcacaacttacatctaaaaataacaaataaattaacaaaactatactcatcaaagatgcacaaaatctta |
43988806 |
T |
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| Q |
505 |
acactttaaattcgactacaataccctataaatttgaacatattctttgtcgtcaaatgtacacactgtttaggttatttaggtttctaattgtttcaaa |
604 |
Q |
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| T |
43988805 |
acattttaaattcgactacaataccctataaatttgaacatattctttgtcatcaaatgtacacactgtttaggttatttaggtttctagttgtttcaaa |
43988706 |
T |
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| Q |
605 |
agaggggagcaaac |
618 |
Q |
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| T |
43988705 |
agaggggagcaaac |
43988692 |
T |
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