View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-14 (Length: 399)
Name: NF1705-Insertion-14
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 40159013 - 40158620
Alignment:
| Q |
7 |
acatgacacttacacacatcgacaattatttgataaaaatgatgtaattaaagtgaaatcacatgtgtcagtgtcggacacttgacacatgtctgatacc |
106 |
Q |
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| T |
40159013 |
acatgacacttacacacatcgacaattatttgataaaaatgatgtaattaaagtgaaatcacatgtgtcagtgtcggacacttgacacatgtctgatacc |
40158914 |
T |
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| Q |
107 |
tgaaacgtctttgatcagaagtgtcggtgctacagaggttcgcaannnnnnnnnnnnngaaaggttgtattttgcattaccgttgatttgtgcatcaata |
206 |
Q |
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| T |
40158913 |
tgaaacgtctttgattaggagtgtcggtgctacagaggttcgcaattttttattttttgaaaggttgtattttgcattaccgttgatttgtgcatcaata |
40158814 |
T |
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| Q |
207 |
ctgcgttcccaactatgcagcactgacacagacacgaacactagacattacact-atacttatttgagaaaataatataataaatggaatcacatgtgtc |
305 |
Q |
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| T |
40158813 |
ctgtgttcccaactatgcagcactgacacagacacgaacactagacattacactgatacttatttgagaaaacaatataataaatggaatcacatgtgtc |
40158714 |
T |
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| Q |
306 |
tgtggcggacacttgaaatgtattcgatcagaagtgtcagtgctatagaggttcccaattttttatgaaaggttgttttttgcattgctgctga |
399 |
Q |
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| T |
40158713 |
tgtgtcggacacttgaaatgtattcgattagaagtgtcagtgctatagaggttcccaattttttatgaaaggttgttttttgcattgctgctga |
40158620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 40158404 - 40158360
Alignment:
| Q |
325 |
gtattcgatcagaagtgtcagtgctatagaggttcccaatttttt |
369 |
Q |
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| T |
40158404 |
gtatttgatcagaagtgtcggtgctatagaggctcccaatttttt |
40158360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 18263564 - 18263605
Alignment:
| Q |
104 |
acctgaaacgtctttgatcagaagtgtcggtgctacagaggt |
145 |
Q |
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| T |
18263564 |
acctgacacgtcttcgatcagaagtgtcggtgctacagaggt |
18263605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 38873161 - 38873128
Alignment:
| Q |
112 |
cgtctttgatcagaagtgtcggtgctacagaggt |
145 |
Q |
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| T |
38873161 |
cgtcttcgatcagaagtgtcggtgctacagaggt |
38873128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 41427738 - 41427767
Alignment:
| Q |
111 |
acgtctttgatcagaagtgtcggtgctaca |
140 |
Q |
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| T |
41427738 |
acgtctttgatcagaagtgtcggtgctaca |
41427767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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