View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-2 (Length: 436)
Name: NF1705-Insertion-2
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 10342109 - 10342295
Alignment:
| Q |
8 |
ggtttcatatgtgcattaataagattttaaactaaattaaaatttgctggaagaaatcgtataacctaagattttatannnnnnnnnnaaggggaactta |
107 |
Q |
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| T |
10342109 |
ggtttcatatgtgcattaataaaattttaaactaaattaaaatttgctggaagaaatcgtataacctaagattttagattttttttt-aaggggaactta |
10342207 |
T |
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| Q |
108 |
agatttttgatgccataatcaaaagtgttaacacctttagaaatctcaatctccttgatcatcttcgaaatatacatcaataccataa |
195 |
Q |
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| T |
10342208 |
agatttttgatgccataatcaaaagtgttaacacctttagaaatctaaatctccttgatcatcttccaaatatacatcaataccataa |
10342295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 10342807 - 10342858
Alignment:
| Q |
243 |
atatcatttgaagagcaaactacaagactagt-ctcaaattcatagcttcaa |
293 |
Q |
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| T |
10342807 |
atatcatttcaagagcaaactacaagactagtcctcaaattcatagcttcaa |
10342858 |
T |
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