View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705-Insertion-3 (Length: 866)
Name: NF1705-Insertion-3
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 289 - 866
Target Start/End: Original strand, 14304425 - 14305010
Alignment:
| Q |
289 |
tttctgtaagatatcttaaacatatctactccannnnnnn-atcaatggtctttgttgatgtcattaattcacaactcacagtattgcagtcttatagta |
387 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||| ||||||||||| |||||| |
|
|
| T |
14304425 |
tttctataagataccttaaacatatctactccatcttattgatcaatgatctttgttgatgtcaatgattcacaactcacaatattgcagtctcatagta |
14304524 |
T |
|
| Q |
388 |
gtaaatagaataaaatcatg-----------gtgagtctcacaaaatcacattgacagtgtgattttattgaagctcctaattgcagcttttgcaaaaat |
476 |
Q |
| |
|
||| || |||||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14304525 |
gtagattgaataagatcatgttggaatcacggtgagtctcacaaaatcacattgacaatgtaattttattgaagctcct---tgcagcttttgctaaaat |
14304621 |
T |
|
| Q |
477 |
cacagtagcacatcgtgattctgataaaacaataaactctcaaaaggtaagattttttccatgctctttttcgtaaccaaattctttttcttgttaagga |
576 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||| | |||||||||||| |||| |
|
|
| T |
14304622 |
cacggtagcacatcgtgattctaataaaacaataaactctcaaaaggttgaatttttgccatgct-tttttc-taaccaattcctttttcttgttcagga |
14304719 |
T |
|
| Q |
577 |
aatttcatttcaaccaaagtgatct-tgtagttaatgacctaaaagaggagnnnnnnnnnnnngatctttgaatcaaaataatggcattagctcctattc |
675 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||||||||| | || | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14304720 |
attttcatttcaaccaaagtgatccatgtaattaatgacctaaaggcggtgttttagttttttgatctttgaatcaaaataatggcactagctcctattc |
14304819 |
T |
|
| Q |
676 |
caaaagttgttctaggttcaattgcctttgcaattttctggatattagcagtttttcctgcagttccttttctaccaattggtagaacagcaggatccct |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14304820 |
caaaagttgttctaggttcaattgcctttgcaattttctggatattagcagtttttccagcagttccttttctaccaattggtagaacagcaggatccct |
14304919 |
T |
|
| Q |
776 |
attaggtgcaatgcttatggtaatattcagaattataagtccggacgaagcttacaccgcaatcgatcttccaattctcggtcttctattc |
866 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
14304920 |
attaggtgcgatgcttatggtaatattcagagttataagtccggacgaagcttacgccgcaatcgatcttccgattcttggtcttctattc |
14305010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 14303910 - 14304039
Alignment:
| Q |
30 |
tttgtgctgttttattagacttctattttccttaaatataaatgttatataagatgatattatcttttgctaatattttccacaaccaattttccatagt |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
14303910 |
tttgtgctgttttattagccttctattttctttaaatatatatgttatataagatgatattatc-tttgctaatattttccacaaccaattatctatagt |
14304008 |
T |
|
| Q |
130 |
ggcataaaattgaagtaaattacattgcatg |
160 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||| |
|
|
| T |
14304009 |
ggcatagaattgaactaaattactttgcatg |
14304039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 14304121 - 14304202
Alignment:
| Q |
218 |
atctaactattttccatttcagggttttgtgaattggtttgattctcttagaaaagtgtagagacttgaattttctgtaaga |
299 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
14304121 |
atctaaatattttccatttcggggttttctgaattggtttgattctcttagaagagtgtagagacttgaattttctgaaaga |
14304202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 7e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 644 - 862
Target Start/End: Complemental strand, 16402157 - 16401939
Alignment:
| Q |
644 |
ttgaatcaaaataatggcattagctcctattccaaaagttgttctaggttcaattgcctttgcaattttctggatattagcagtttttcctgcagttcct |
743 |
Q |
| |
|
|||||| |||| ||||||| ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
16402157 |
ttgaataaaaaaaatggcactagctccaattccaaaagttgttttaggttcaatagcctttgccattttctggatattagcagtttttccagcagttcca |
16402058 |
T |
|
| Q |
744 |
tttctaccaattggtagaacagcaggatccctattaggtgcaatgcttatggtaatattcagaattataagtccggacgaagcttacaccgcaatcgatc |
843 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| || |||| | |||||| ||||| ||| | |||||||||| |
|
|
| T |
16402057 |
tttctaccaataggtagaacagcaggatctcttttaggtgcaatgcttatggtaatatttcgagttattactccggaagaagcgtacgctgcaatcgatc |
16401958 |
T |
|
| Q |
844 |
ttccaattctcggtcttct |
862 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16401957 |
ttccaattctcggtcttct |
16401939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 456 - 581
Target Start/End: Complemental strand, 16402370 - 16402245
Alignment:
| Q |
456 |
aattgcagcttttgcaaaaatcacagtagcacatcgtgattctgataaaacaataaactctcaaaaggtaagattt-tttccatgctctttttcgtaacc |
554 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||| || |||| || |||||||| || |||||| ||| |||| | |||||| ||||| |
|
|
| T |
16402370 |
aattgtagcttttgctaaaatcacagtagctcatcgtgattctgactaagcaatgaagtctcaaaaagttagatttcttttcatggtttttttc-taacc |
16402272 |
T |
|
| Q |
555 |
aaattctttttcttgttaaggaaattt |
581 |
Q |
| |
|
|||||||||| |||||| ||||||||| |
|
|
| T |
16402271 |
aaattcttttccttgttcaggaaattt |
16402245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 16402672 - 16402609
Alignment:
| Q |
218 |
atctaactattttccatttcagggttttgtgaattggtttgattctcttagaaaagtgtagaga |
281 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
16402672 |
atctagctattttctatttctgggttttgagaattggtttgattctcttagaagagtgtagaga |
16402609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University