View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-5 (Length: 402)
Name: NF1705-Insertion-5
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 41971579 - 41971185
Alignment:
| Q |
8 |
ggtgccaagtgaaatttttccacttgaggtgcgatcagcggctcaaagtgtcaatgtttcggttaacacgattttcacatttgccattgctcgagttttc |
107 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41971579 |
ggtgccaagtgaaacttttccacttgaggtgcgatcagcggctcaaagtgtcaatgtttcggttaacatgattttcacatttgccattgctcgagttttc |
41971480 |
T |
|
| Q |
108 |
accaccatgttgtgccacatgaagtttgtactcttcatcttctttgcattttttgtggcggtgatgagcttgtttatttacaagtttttgccggagacca |
207 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41971479 |
accaccatgtcgtgccacatgaagtttggactcttcatcttctttgcattttttgtggtggtgatgagcttgtttatttacaagtttttgccggagacca |
41971380 |
T |
|
| Q |
208 |
aaggtgttcctattgaagaaatgtttgtggtgtggcaaaatcattcttattggaggaagtttgtgaaaccagcggaagagcatggcggtggacaggccta |
307 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41971379 |
aaggtgttcctattgaagaaatgtttatggtgtggcaaaatcattcttattggaggaagtttgtgaaaccagcggaagagcatggcggtgggcaggccta |
41971280 |
T |
|
| Q |
308 |
gttttagcttcactattagnnnnnnnaagtcatttttaatagaaatccaaattacacttactttagcagctctatttaattagagcaccttttga |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41971279 |
gttttagcttcactattagtttttttaagtcatttttaatagaaatccaaattacacttactttagcagctctatttaattagagcaccttttga |
41971185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 18233966 - 18233743
Alignment:
| Q |
8 |
ggtgccaagtgaaatttttccacttgaggtgcgatcagcggctcaaagtgtcaatgtttcggttaacacgattttcacatttgccattgctcgagttttc |
107 |
Q |
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||||||||||||||| || ||||| || || || || |||||||||||| ||||||| || ||||||| ||||| ||| ||| |||||||| | ||||| |
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| T |
18233966 |
ggtgccaagtgaaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacctttatcattgctcaaattttc |
18233867 |
T |
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| Q |
108 |
accaccatgttgtgccacatgaagtttgtactcttcatcttctttgcattttttgtggcggtgatgagcttg-tttatttacaagtttttgccggagacc |
206 |
Q |
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|| || ||| | || ||||||||||||| | | || |||||||| || ||||| || | ||||||| || | |||||||||||||||||||| ||||| |
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| T |
18233866 |
actacaatgctttgtcacatgaagtttggattatttatcttcttcgcctttttcgttgttgtgatga-ctggatttatttacaagtttttgccagagacg |
18233768 |
T |
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| Q |
207 |
aaaggtgttcctattgaagaaatgt |
231 |
Q |
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| T |
18233767 |
aagggagttccaatcgaagaaatgt |
18233743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 1239073 - 1238679
Alignment:
| Q |
8 |
ggtgccaagtgaaatttttccacttgaggtgcgatcagcggctcaaagtgtcaatgtttcggttaacacgattttcacatttgccattgctcgagttttc |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
1239073 |
ggtgccaagtgaaatttttccacttgaggttcgatcagcggctcaaagtgtcaatgtttcggttaacatgattttcacatttgccattgctcaagttttc |
1238974 |
T |
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| Q |
108 |
accaccatgttgtgccacatgaagtttgtactcttcatcttctttgcattttttgtggcggtgatgagcttgtttatttacaagtttttgccggagacca |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
1238973 |
accaccatgttgtgccacatgaagtttggactcttcatcttctttgcacttttggtggtggtgatgagcttgtttatttacaagtttttgcaggagacca |
1238874 |
T |
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| Q |
208 |
aaggtgttcctattgaagaaatgtttgtggtgtggcaaaatcattcttattggaggaagtttgtgaaaccagcggaagagcatggcggtggacaggccta |
307 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238873 |
aaggtgttcctattgaagaaatgtttgtggtgtggataaatcattcttattggaggaagtttgtgaaaccagcggaagagcatggcggtggacaggccta |
1238774 |
T |
|
| Q |
308 |
gttttagcttcactattagnnnnnnnaagtcatttttaatagaaatccaaattacacttactttagcagctctatttaattagagcaccttttga |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238773 |
gttttagcttcactattagtttttttaagtcatttttaatagaaatccaaattacacttactttagcagctctatttaattagagcaccttttga |
1238679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 42517692 - 42517372
Alignment:
| Q |
8 |
ggtgccaagtgaaatttttccacttgaggtgcgatcagcggctcaaagtgtcaatgtttcggttaacacgattttcacatttgccattgctcgagttttc |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
42517692 |
ggtgccaagtgaaattttcccacttgaggtgcgatcagcagctcaaagtgtcaatgtttctgttaacatgattttcacatttgccattgctcaagttttc |
42517593 |
T |
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| Q |
108 |
accaccatgttgtgccacatgaagtttgtactcttcatcttctttgcattttttgtggcggtgatgagcttgtttatttacaagtttttgccggagacca |
207 |
Q |
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||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42517592 |
accgccatgttgtgccacatgaagtttggactattcatcttctttgcattttttgttgtggttatgagcttgtttatttacaagtttttgccggagacca |
42517493 |
T |
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| Q |
208 |
aaggtgttcctattgaagaaatgtttgtggtgtggcaaaatcattcttattggaggaagtttgtgaaaccagcggaagagca------tggcggtggaca |
301 |
Q |
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|||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| | || || || |||||||||||| |
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| T |
42517492 |
aaggtgttccaattgaagaaatgtctaaagtgtggcaaaatcattcttattggaagaagtttgtgaaaccgacagacgaccataacagtggcggtggaca |
42517393 |
T |
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| Q |
302 |
ggcctagttttagcttcacta |
322 |
Q |
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|||||||||||||||||||| |
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| T |
42517392 |
agcctagttttagcttcacta |
42517372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 42517325 - 42517255
Alignment:
| Q |
334 |
aagtcatttttaatagaaatccaaattacac--ttactttagcagctctatttaattagagcaccttttga |
402 |
Q |
| |
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|||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
42517325 |
aagtcacttttaatagaaatctaaattacacacttactttaggagctctatttaattagagcaccttttga |
42517255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 21403592 - 21403651
Alignment:
| Q |
201 |
gagaccaaaggtgttcctattgaagaaatgtttgtggtgtggcaaaatcattcttattgg |
260 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
21403592 |
gagaccaaaggtgttcctactgaagaaatgttggtggtgtggcaaaatcattcttattgg |
21403651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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