View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705-Insertion-6 (Length: 622)
Name: NF1705-Insertion-6
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 44830057 - 44829754
Alignment:
| Q |
8 |
cctcctctccaagatttctaaacaaaatacagaggattaagagaggaacaaaaataataggaaaaatgatagtatatcaatttgcannnnnnnnnnaata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44830057 |
cctcctctccaagatttctaaacaaaatatagaggattaagagaggaacaaaaataataggaaaaatgatagtatatcaatttgcattttttttt-aata |
44829959 |
T |
|
| Q |
108 |
tagcattgttaattcaaccaataaaaataccaaaattattaaactgaatgtcatgaccaaagttcaaattccaactattgattatcgtcatttttgtcta |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
44829958 |
tagcattgttaattcaaccaataaaaacaccaaaattattaaactgaatgtcatgaccaaagttcaaattccaactattggt-atcgtcatttttgtcta |
44829860 |
T |
|
| Q |
208 |
tctattnnnnnnngctctactatatgtgtgtttggttaggtcttgtgtcctgataaaaatcatttagtaatatgtggttgagaaatgttaggtttactca |
307 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829859 |
tctattaaaaaaagctctactatatgtgtgtttggttaggtcttgtgtcatgataaaaatcatttagtaatatgtggttgagaaatgttaggtttactca |
44829760 |
T |
|
| Q |
308 |
ttctaa |
313 |
Q |
| |
|
|||||| |
|
|
| T |
44829759 |
ttctaa |
44829754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 369 - 578
Target Start/End: Complemental strand, 44829688 - 44829481
Alignment:
| Q |
369 |
ggtcctcgtaaacaatataatatatagttcatgttgatttgttccatattgacaagatattccttttttgcgggagcctactaccttgctactacttcaa |
468 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829688 |
ggtcctcgtaaacaatataatata--gttcatgttgatttgttccatattgacaagatattccttttttgcgggagcctactaccttgctactacttcaa |
44829591 |
T |
|
| Q |
469 |
aagggagagtgttgcgtgtggcaatacttttatcacctatccaacctattttgtttcttgtggttgtggccaatttcatatctgggataatactgatgca |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44829590 |
aagggagagtgttgcgtgtggcaatacttttatcacctatccaacctattttgtttcttgtggttgtggccaatttcatatctgggataatattgatgca |
44829491 |
T |
|
| Q |
569 |
tcgacaataa |
578 |
Q |
| |
|
|||||||||| |
|
|
| T |
44829490 |
tcgacaataa |
44829481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University