View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-7 (Length: 390)
Name: NF1705-Insertion-7
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 42967728 - 42967977
Alignment:
| Q |
6 |
caaccacaagcagaagtgagtaattgttcatcaccggttccctgttgctttctttagcagtaataaattgtcataaacaaccacaggcagggaaatttaa |
105 |
Q |
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| T |
42967728 |
caaccacaagcagaagtgagtaattgttcatcaccggttccctgttgctttctttagcagtaataaattgtcataaacaaccacaggcagggaaatttaa |
42967827 |
T |
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| Q |
106 |
tttgcctttccgttggttctgaaatttacaccaaaaataaataaaaatgagtcagaagtacagaactcatagctgatggggtctcaccacaaaagagtaa |
205 |
Q |
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| T |
42967828 |
tttgcctttccgttagttctgaaatttacaccaaaaataaataaaaatgagtcagaagtacagaactcatagctgatggggtctcaccacaaaagagtaa |
42967927 |
T |
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| Q |
206 |
atattgctggcttaaacctggcaacttaaattcatgtactaccatttttt |
255 |
Q |
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| T |
42967928 |
atattgctggcttaaacctggcaacttaaattcatgtactaccatttttt |
42967977 |
T |
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Back To:
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 54608878 - 54608848
Alignment:
| Q |
244 |
ctaccattttttataggctaaaatatggttt |
274 |
Q |
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| T |
54608878 |
ctaccattttttataggctaaaatatggttt |
54608848 |
T |
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