View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705-Insertion-8 (Length: 660)

Name: NF1705-Insertion-8
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705-Insertion-8
NF1705-Insertion-8
[»] chr5 (7 HSPs)
chr5 (8-185)||(9625605-9625782)
chr5 (227-449)||(9625824-9626046)
chr5 (529-657)||(9626117-9626245)
chr5 (64-133)||(9629148-9629217)
chr5 (313-422)||(9629317-9629426)
chr5 (8-46)||(39305632-39305670)
chr5 (12-44)||(17539964-17539996)
[»] chr7 (2 HSPs)
chr7 (8-45)||(4926275-4926312)
chr7 (8-44)||(14792511-14792547)
[»] chr1 (1 HSPs)
chr1 (8-44)||(46336302-46336338)
[»] chr6 (1 HSPs)
chr6 (8-43)||(23594693-23594728)
[»] chr4 (1 HSPs)
chr4 (8-43)||(12240558-12240593)
[»] chr2 (1 HSPs)
chr2 (529-600)||(43699166-43699237)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 9625605 - 9625782
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatcccgtggagcaaacgtgcgtggatgtgtgtgggaatgtctagctgatctcatctttatatcaaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625605 aactgcgtgtaaatattacagcagtaaatcccatcccgtggagcaaacgtgcgtggatgtgtgtgggaatgtctagctgatctcatctttatatcaaaca 9625704  T
Q  108 aatccgaaccatcaataaaatccaacgttaattttttgggttggttggttgcacggatgaaggatttaatcgagcatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9625705 aatccgaaccatcaataaaatccaacgttaattttttgggttggttggttgcacggatgaaggatttaattgagcatg 9625782  T

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Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 227 - 449
Target Start/End: Original strand, 9625824 - 9626046
Alignment:
Q  227 cataaaaaatctcttctactcccccttcagaaagnnnnnnnttcttcgacttttagttggacaaattctataattgtttttattcttcgacttttagtcc 326  Q
    |||||||||| ||||||||||||| |||| ||||       ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9625824 cataaaaaatttcttctactcccc-ttcaaaaagaaaaaaattcttcgacttttagttggacaaattctataattgttt--attcttcgacttttagtcc 9625920  T
Q  327 tcataaatttttcaataaattcatacgtatcatttgaaaatttgatttttctatttacagttgtggttaaaatattataacaacatttccc---aaaaat 423  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  9625921 tcataaattttttaataaattcatacgtatcatttgaaaatttgatttttctatttacagttgtggttaaaatattataacaacatttcccaagaaaaat 9626020  T
Q  424 agaatttttgaacagcatgaataaga 449  Q
    |||||||||||||| |||||||||||    
T  9626021 agaatttttgaacaacatgaataaga 9626046  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 529 - 657
Target Start/End: Original strand, 9626117 - 9626245
Alignment:
Q  529 cttataatattctcaacatagttgcaaaagctcattcaaaaatttgataggtatacatgaaatgacttaaaatggagtaaaagtgatgattgaaatgttt 628  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  9626117 cttataatattctcaacattgttgcaaaaactcattcaaaaatttgattggtatacatgaaatgacttaaaatggagtaaaaatgatgattgaaattttt 9626216  T
Q  629 taggagactaaaagtcgaagatagttttt 657  Q
    ||| ||||||||||||||||||| |||||    
T  9626217 tagaagactaaaagtcgaagatatttttt 9626245  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 9629148 - 9629217
Alignment:
Q  64 atgtgtgtgggaatgtctagctgatctcatctttatatcaaacaaatccgaaccatcaataaaatccaac 133  Q
    |||||||  |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9629148 atgtgtggaggaatgtcgagctgatctcatcattatatcaaacaaattcgaaccatcaataaaatccaac 9629217  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 9629317 - 9629426
Alignment:
Q  313 tcgacttttagtcctcataaatttttcaataaat-tcatacgtatcatttgaaaatttgatttttctatttacagttgtggttaaaatattataacaaca 411  Q
    |||||||||| ||||||||||||||||||   || | ||  ||||||||||| | ||||||||||||||| ||| || |||||||||||||||||||| |    
T  9629317 tcgacttttaatcctcataaatttttcaactcatgttatgtgtatcatttgatattttgatttttctatt-acaattatggttaaaatattataacaata 9629415  T
Q  412 tttcccaaaaa 422  Q
    |||||||||||    
T  9629416 tttcccaaaaa 9629426  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 39305632 - 39305670
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatcccgt 46  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  39305632 aactgcgtgtaaatattacagcaggaaatcccatcccgt 39305670  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 17539996 - 17539964
Alignment:
Q  12 gcgtgtaaatattacagcagtaaatcccatccc 44  Q
    |||||||||||||||||||| ||||||||||||    
T  17539996 gcgtgtaaatattacagcagcaaatcccatccc 17539964  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 4926275 - 4926312
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatcccg 45  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4926275 aactgcgtgtaaatattacagcaggaaatcccatcccg 4926312  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 14792511 - 14792547
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatccc 44  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14792511 aactgcgtgtaaatattacagcagcaaatcccatccc 14792547  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 46336338 - 46336302
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatccc 44  Q
    |||||||||||||||||||||||| ||||||||||||    
T  46336338 aactgcgtgtaaatattacagcaggaaatcccatccc 46336302  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 23594693 - 23594728
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatcc 43  Q
    |||||||||||||||||||||||| |||||||||||    
T  23594693 aactgcgtgtaaatattacagcaggaaatcccatcc 23594728  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 12240593 - 12240558
Alignment:
Q  8 aactgcgtgtaaatattacagcagtaaatcccatcc 43  Q
    |||||||||||||||||||||||| |||||||||||    
T  12240593 aactgcgtgtaaatattacagcaggaaatcccatcc 12240558  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 600
Target Start/End: Complemental strand, 43699237 - 43699166
Alignment:
Q  529 cttataatattctcaacatagttgcaaaagctcattcaaaaatttgataggtatacatgaaatgacttaaaa 600  Q
    ||||||||||||| |||||  |||||||| ||||| |||||||||||| |||| || | || ||||||||||    
T  43699237 cttataatattctaaacattattgcaaaatctcatccaaaaatttgattggtacaccttaactgacttaaaa 43699166  T

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