View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_high_12 (Length: 300)
Name: NF17050_high_12
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 402086 - 401817
Alignment:
| Q |
9 |
caatttggttcctgataatgtgactaaaatttttaattttaaggatcattttgaaattacgttaatttcagagactaaattgcttgactcttacaatttc |
108 |
Q |
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| T |
402086 |
caatttggttcctgataatgtgactgaaatttttaattttaaggatcattttgaaatgacattaatttcagagactaaattgcttgactcttacaatttc |
401987 |
T |
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| Q |
109 |
aaggactagattactgattcacccaattggaatcaaatgtttgcatgtaattgattgagattattgtgcctgcctgcgcatgtgctgtcaggttgagaat |
208 |
Q |
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| T |
401986 |
aaggactagattagtgattcacccaattggaatcaaatgtttgcatgtaattgattgagattattgtgcctgcc--------tgctgtcaggttgagaat |
401895 |
T |
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| Q |
209 |
ctattctataatatggctgcaaggaagaagacactacaaaattcttcagatgattactcaaagatagtggatgatgtc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
401894 |
ctattctataatatggctgcaaggaagaagacactacaaaattcttcagatgattactcaaagatagtggatgttgtc |
401817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 34618350 - 34618382
Alignment:
| Q |
82 |
actaaattgcttgactcttacaatttcaaggac |
114 |
Q |
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| T |
34618350 |
actaaattgcttgactcttacaatttcaaggac |
34618382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 34745787 - 34745819
Alignment:
| Q |
82 |
actaaattgcttgactcttacaatttcaaggac |
114 |
Q |
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| T |
34745787 |
actaaattgcttgactcttacaatttcaaggac |
34745819 |
T |
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