View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17050_high_18 (Length: 232)

Name: NF17050_high_18
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17050_high_18
NF17050_high_18
[»] chr8 (11 HSPs)
chr8 (84-213)||(25489418-25489547)
chr8 (84-207)||(25646246-25646369)
chr8 (119-207)||(24913783-24913871)
chr8 (84-211)||(25603826-25603951)
chr8 (84-183)||(25799544-25799640)
chr8 (84-146)||(25694637-25694699)
chr8 (84-157)||(25321934-25322004)
chr8 (1-41)||(25489590-25489630)
chr8 (1-41)||(25694742-25694782)
chr8 (1-41)||(24913666-24913706)
chr8 (1-41)||(25646412-25646452)
[»] scaffold0070 (2 HSPs)
scaffold0070 (119-207)||(17826-17912)
scaffold0070 (1-41)||(17709-17749)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 25489547 - 25489418
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  184 attgaatatttctgtcttttatgtcatatc 213  Q
    ||||||||||||||||||||||||||||||    
T  25489447 attgaatatttctgtcttttatgtcatatc 25489418  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 25646369 - 25646246
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  184 attgaatatttctgtcttttatgt 207  Q
     |||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgt 25646246  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 24913783 - 24913871
Alignment:
Q  119 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgt 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgt 24913871  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 182  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  183 gattgaatatttctgtcttttatgtcata 211  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 183  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  84 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 157  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25489630 - 25489590
Alignment:
Q  1 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25489630 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25694782 - 25694742
Alignment:
Q  1 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25694782 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24913666 - 24913706
Alignment:
Q  1 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  24913666 aaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25646452 - 25646412
Alignment:
Q  1 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  25646452 aaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

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Target: scaffold0070 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 17826 - 17912
Alignment:
Q  119 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgt 207  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| ||||||||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgt 17912  T

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Target: scaffold0070; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17709 - 17749
Alignment:
Q  1 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17709 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

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