View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_high_3 (Length: 553)
Name: NF17050_high_3
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Original strand, 6485756 - 6486298
Alignment:
| Q |
11 |
cagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtaatggattccaagcactttgaatcggcgattctccaaac |
110 |
Q |
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| T |
6485756 |
cagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtaatggattccaagcactttgaatcggcgattctccaaac |
6485855 |
T |
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| Q |
111 |
tttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaaggcttaggcatgaaactgcatccgaatgtttgatccataatgcagtt |
210 |
Q |
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| T |
6485856 |
tttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaagacttaggcatgaaactgcatccgaatgtttgatccataatgcagtt |
6485955 |
T |
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| Q |
211 |
cggtgttttctaacctcgacataattgcttggtttaatcgagcttttgaagatgtctttgagtgttggtaatgttccggcacgtttgtgaacgctagggt |
310 |
Q |
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| T |
6485956 |
cggtgttttctaacctcgacataattgcttggtttaattgagcttttgaagatgtctttgagtgttggtaatgttccagcacgtttgtgaacgctagggt |
6486055 |
T |
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| Q |
311 |
tcttgagagaaactttccaaacacggattttaccgtcttggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttgga |
410 |
Q |
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| T |
6486056 |
tcttgagagagactttccaaacacggattttaccgtcttggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttgga |
6486155 |
T |
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| Q |
411 |
tttgaatccgcaatattcttgaagattcttccacacacgaatgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatg |
510 |
Q |
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| T |
6486156 |
tttgaatccgcaatattcttgaagattcttccacacacgaatgttcttgctgtctgagccggtgtataataagtcaccggatgcggctaaagaataaatg |
6486255 |
T |
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| Q |
511 |
tgaccctcttcgcgaaccagtgaaccgattagtgaattctgtg |
553 |
Q |
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| T |
6486256 |
tgaccctcttcgcggaccagtgaaccaattagtgaattctgtg |
6486298 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 539
Target Start/End: Original strand, 25703316 - 25703404
Alignment:
| Q |
451 |
atgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcgaaccagtgaaccgat |
539 |
Q |
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| T |
25703316 |
atgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcgagctagtgacccgat |
25703404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 6917655 - 6917703
Alignment:
| Q |
434 |
gattcttccacacacgaatgttcttgctgtctgaaccggtgtataataa |
482 |
Q |
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| T |
6917655 |
gattcttccaaacacgaatgtttttactatcagaaccggtgtataataa |
6917703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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