View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17050_high_8 (Length: 386)
Name: NF17050_high_8
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 48707418 - 48707045
Alignment:
| Q |
1 |
tgtacaagtacagttaacagccatcaagaaaaataaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48707418 |
tgtacaagtacagttaacagccatcaagaaaaataaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatc |
48707319 |
T |
|
| Q |
101 |
tcatcatgccattaaatgctaataaattcaattattggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48707318 |
tcatcatgccattaaatgctaataaattcaattattggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgc |
48707219 |
T |
|
| Q |
201 |
ttatcccttacnnnnnnnccctgccggtgaagtgaactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatca |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48707218 |
ttatcccttactttttttccctgccggtgaagtgaactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatca |
48707119 |
T |
|
| Q |
301 |
tttaatcaattgattcatcagtagcagtttatacttcatacacggtattggtctaaaataagctagttcatctc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48707118 |
tttaatcaattgattcatcagtagcagtttatacttcatacacggtattggtctaaaataagccagttcatctc |
48707045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University