View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_1 (Length: 827)
Name: NF17050_low_1
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 376 - 689
Target Start/End: Complemental strand, 494721 - 494422
Alignment:
| Q |
376 |
agtgatggaatgtaaaaa-tacatgtgaaatttcagtctccgctaggcctctactacatccactatatttctaatagtacattcttccataagaaatgaa |
474 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||| |
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| T |
494721 |
agtgatggaatttaaaaaatacatgtgaaatttcagtctccgctaggcctctacta-----------tgtttaata---cattcttccataagaaatgaa |
494636 |
T |
|
| Q |
475 |
gcatggattatgatatgtaatactaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaataaatttgtcat |
574 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
494635 |
gcatggattatgatatgtaattctaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaacaaatttgtcat |
494536 |
T |
|
| Q |
575 |
taatcaatacctatgttattatttttgcttttctagtcaccatgttacccatgactcaatatttattattagaagtcaatgctcgagttatgcatgtatg |
674 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
494535 |
taatcaata-ctatgttattatttttgcttttctagtcctcatgttactcatgactcgatgtttattattagaagtcaatgctcgatttatgcatgtatg |
494437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 495268 - 495035
Alignment:
| Q |
1 |
gcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495268 |
gcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgatgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatct |
495169 |
T |
|
| Q |
101 |
ctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttcaagggggaaattatatttttaaagcattgatataatagt-a |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |
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| T |
495168 |
ctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttctagggggaaattatatttttaaagcattgatacaatagtaa |
495069 |
T |
|
| Q |
200 |
attactaataactaatatatcatagtgcatcaaa |
233 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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| T |
495068 |
attactaataactaatttatcatagtgcatcaaa |
495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 10979640 - 10979533
Alignment:
| Q |
258 |
tagtttggtttctt-aggaatttattgtccacttcctgataagattcatcggctatctttgcttgaagttttggatttgagctcaaatttcttatttgat |
356 |
Q |
| |
|
|||||||||||||| |||||| | |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
10979640 |
tagtttggtttctttaggaatatggggtccactttctgataaaattcataggctatctttgcttgaagttttggatttgagttcaaatttcttatttggt |
10979541 |
T |
|
| Q |
357 |
tctattcc |
364 |
Q |
| |
|
|||||||| |
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|
| T |
10979540 |
tctattcc |
10979533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 25500983 - 25501091
Alignment:
| Q |
10 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatct |
109 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||| |||||||||||| |||| || |||||||||| |||| || |||||||||||||| |
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| T |
25500983 |
ttgagcctaaaatccaacttccttacaattggtatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagtaactaatctctttaatct |
25501082 |
T |
|
| Q |
110 |
aggcctttt |
118 |
Q |
| |
|
|||||||| |
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|
| T |
25501083 |
tggcctttt |
25501091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 25642403 - 25642511
Alignment:
| Q |
10 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatct |
109 |
Q |
| |
|
|||||||||||||| | || ||||||||||||| ||||||| ||||||||||| ||||| || | ||||||||| ||||||| ||||||||||||| |
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| T |
25642403 |
ttgagcctaaaatccaactcccttacaattggtttgtttctgatgaagatgaagccgagaaggatggagccaaggggaaagaaactgatctctttaatct |
25642502 |
T |
|
| Q |
110 |
aggcctttt |
118 |
Q |
| |
|
|||||||| |
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|
| T |
25642503 |
tggcctttt |
25642511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 25492604 - 25492710
Alignment:
| Q |
10 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatct |
109 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||| || |||||||||||| |||| || |||||||||| ||||||| ||||||||||||| |
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| T |
25492604 |
ttgagcctaaaatccaacttccttacaattggtatgtttgtgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatctctttaatct |
25492703 |
T |
|
| Q |
110 |
aggcctt |
116 |
Q |
| |
|
|||||| |
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|
| T |
25492704 |
tggcctt |
25492710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 25473950 - 25473842
Alignment:
| Q |
10 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatga-agaagccaagggaaaagaaatcaatctctttaatc |
108 |
Q |
| |
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||||| |||||||| | |||||||||||||||| ||||||| |||||| | | |||||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
25473950 |
ttgagactaaaatccaacttccttacaattggttagtttctaacgaagattcaatcgagaatgatagaa-ccaagggaaaagaaaccgatctctttaatc |
25473852 |
T |
|
| Q |
109 |
taggcctttt |
118 |
Q |
| |
|
| |||||||| |
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|
| T |
25473851 |
ttggcctttt |
25473842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 25449968 - 25450057
Alignment:
| Q |
29 |
tccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcctttt |
118 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||| || ||||||||||| || |||| ||||||||||||| |||||||| |
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|
| T |
25449968 |
tccttacaattggttagtttctaaagaagatgaagccgagaaagatgaagccaaggggaaggaaactgatctctttaatcttggcctttt |
25450057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 25429197 - 25429256
Alignment:
| Q |
10 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgaga |
69 |
Q |
| |
|
|||||||||||||| | | |||||||||||||| |||||||| ||||||| |||| |||| |
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|
| T |
25429197 |
ttgagcctaaaatctaacatccttacaattggttagtttctgatgaagataaagtcgaga |
25429256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 35152984 - 35153086
Alignment:
| Q |
15 |
cctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcc |
114 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||| ||| || || |||||||||||| ||||||||| ||||||||| |||| | |||||| |||| |
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|
| T |
35152984 |
cctaaaatccagcttccctacaattggttagttactgaggaggaagaagttgagaattctgaagccaagtcaaaagaaattgatctttataatctgggcc |
35153083 |
T |
|
| Q |
115 |
ttt |
117 |
Q |
| |
|
||| |
|
|
| T |
35153084 |
ttt |
35153086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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