View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_11 (Length: 364)
Name: NF17050_low_11
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 401242 - 401586
Alignment:
| Q |
13 |
cacagacagaagcctttacatgttatgcatagtacattcacggtaagagtttctatgtggcaaaacatattatctgacggaataaactaacactggcaaa |
112 |
Q |
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| T |
401242 |
cacagacagaagcctttacatgttatgcatagtacattcacggtaagagtttctatgtggcaaaacatattatctgacggaataaactaacactgccaga |
401341 |
T |
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| Q |
113 |
gacttcatatagtaactataaacacatctaaacatttcaaaatgcatcatagtttatgtttatatagctaatgtaatgtataatgtataccattgatgaa |
212 |
Q |
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| T |
401342 |
gacttcatataataactataaacacctctaaacatttcaaaatgcatcatagtttatgtttatatagctaatataatgtataatgtataccattgatgaa |
401441 |
T |
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| Q |
213 |
aagcaccatagtgattttcttggcagcatagttagcattagacacataaccatgcatctcaaaaattgaagaagacggatcattgtccgaagcttggact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401442 |
aagcaccatagtgattttcttggcagcatagttagcattagacacataaccatgcatctcaaaaattgaagaagacggatcattgtccgaagcttggact |
401541 |
T |
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| Q |
313 |
tcaatcagattgtgagcagctgagaccccataaactgttctgatg |
357 |
Q |
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| T |
401542 |
tcaatcagattgtgagcagctgagaccccataaactgttctgatg |
401586 |
T |
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