View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_13 (Length: 330)
Name: NF17050_low_13
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 32229989 - 32230294
Alignment:
| Q |
13 |
taatctcgatactccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacatagtcatatgatattttataat |
112 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32229989 |
taatttcgatacaccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacattgtcatatgatattttataat |
32230088 |
T |
|
| Q |
113 |
ttgcatatcttgaaactgattaagccttagaaaagaagaaaaaccaagtgtattttgtatactgcaactatacatgatgttcatgtacatttcatagaac |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230089 |
ttgcatatcttgaaactgattgagccttagaaaagaagaaaaaccaagtgttttttgtatactgcaactatacatgatgttcatgtacatttcatagaac |
32230188 |
T |
|
| Q |
213 |
agtgaaacatataattacagaacttcgttttgttactaaaaccaaatgacatta-tgtacacatatatatacttattggtgttctttctttcttagaagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32230189 |
agtgaaacatataattacagaacttcgttttgttactaaaaccaaatgacattattatgtacatatatatacttattggttttctttcattcttagaagc |
32230288 |
T |
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| Q |
312 |
aggaac |
317 |
Q |
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|||||| |
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| T |
32230289 |
aggaac |
32230294 |
T |
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