View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_16 (Length: 281)
Name: NF17050_low_16
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 1037713 - 1037452
Alignment:
| Q |
1 |
cctcaaaagggacaagaagaaatttctcaaaaggagtctttacctcaaaagggtcaagaagcaatttcacaaatagagtctttacctcaaaagggccaag |
100 |
Q |
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| T |
1037713 |
cctcaaaagggacaagaagaaatttctcaaaaggagtctttacctcaaaagggtcaagaagcaatttcacaaaaagagtctttacctcaaaagggccaag |
1037614 |
T |
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| Q |
101 |
aagaaatttctcnnnnnnngtctttacctcaaaaggatcaagaagaaatttctcaaaaagagtctttagctcaaaagggtcaagaagaaatttctcaaaa |
200 |
Q |
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| T |
1037613 |
aagaaatttctcaaaaaaagtctttacctcagaaggatcaagaagaaatttctcaaaaagagtctttagctcaaaagggtcaagaagaaatttctcaaaa |
1037514 |
T |
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| Q |
201 |
atctcaagttacaaaagttgaaagtaaggaaaatgctcatcaagagacttcaactcaatcag |
262 |
Q |
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| T |
1037513 |
atctcaagttacaaaagttgaaagtaaggaaaatactcatcaagagacttcaactcaatcag |
1037452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1037755 - 1037555
Alignment:
| Q |
1 |
cctcaaaagggacaagaagaaatttctcaaaaggagtctttacctcaaaagggtcaagaagcaatttcacaaatagagtctttacctcaaaagggccaag |
100 |
Q |
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|||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||| |||| |
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| T |
1037755 |
cctcaaaaggttcaacaagaaatttctcaaaaagagtctttacctcaaaagggacaagaagaaatttctcaaaaggagtctttacctcaaaagggtcaag |
1037656 |
T |
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| Q |
101 |
aagaaatttctcnnnnnnngtctttacctcaaaaggatcaagaagaaatttctcaaaaagagtctttagctcaaaagggtcaagaagaaatttctcaaaa |
200 |
Q |
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| T |
1037655 |
aagcaatttcacaaaaagagtctttacctcaaaagggccaagaagaaatttctcaaaaaaagtctttacctcagaaggatcaagaagaaatttctcaaaa |
1037556 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
1037555 |
a |
1037555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 1037756 - 1037597
Alignment:
| Q |
42 |
acctcaaaagggtcaagaagcaatttcacaaatagagtctttacctcaaaagggccaagaagaaatttctcnnnnnnngtctttacctcaaaaggatcaa |
141 |
Q |
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||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
1037756 |
acctcaaaaggttcaacaagaaatttctcaaaaagagtctttacctcaaaagggacaagaagaaatttctcaaaaggagtctttacctcaaaagggtcaa |
1037657 |
T |
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| Q |
142 |
gaagaaatttctcaaaaagagtctttagctcaaaagggtcaagaagaaatttctcaaaaa |
201 |
Q |
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|||| |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
1037656 |
gaagcaatttcacaaaaagagtctttacctcaaaagggccaagaagaaatttctcaaaaa |
1037597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 1037868 - 1037817
Alignment:
| Q |
170 |
ctcaaaagggtcaagaagaaatttctcaaaaatctcaagttacaaaagttga |
221 |
Q |
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||||||| | ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
1037868 |
ctcaaaaagttcaagaagaaaattctcaaaaagatcaagttacaaaagttga |
1037817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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