View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17050_low_18 (Length: 264)

Name: NF17050_low_18
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17050_low_18
NF17050_low_18
[»] chr2 (7 HSPs)
chr2 (11-239)||(25628825-25629044)
chr2 (62-164)||(39822923-39823028)
chr2 (62-160)||(5737196-5737296)
chr2 (62-160)||(18058772-18058873)
chr2 (73-164)||(13466859-13466955)
chr2 (73-112)||(18059005-18059044)
chr2 (73-112)||(39822751-39822790)
[»] chr5 (7 HSPs)
chr5 (62-160)||(43146378-43146478)
chr5 (62-160)||(38089009-38089109)
chr5 (62-160)||(29668548-29668648)
chr5 (62-143)||(2134801-2134884)
chr5 (62-143)||(20256899-20256981)
chr5 (73-143)||(32433647-32433719)
chr5 (73-103)||(33861586-33861616)
[»] chr1 (8 HSPs)
chr1 (62-160)||(36384351-36384450)
chr1 (62-143)||(19563357-19563440)
chr1 (62-143)||(43824196-43824279)
chr1 (62-143)||(41677732-41677815)
chr1 (62-115)||(37028557-37028610)
chr1 (78-143)||(47459163-47459230)
chr1 (68-125)||(18283310-18283369)
chr1 (73-112)||(47458971-47459010)
[»] chr8 (7 HSPs)
chr8 (62-176)||(9305248-9305364)
chr8 (62-159)||(30233835-30233934)
chr8 (62-144)||(29525917-29526001)
chr8 (62-160)||(35162989-35163090)
chr8 (62-160)||(41774973-41775075)
chr8 (62-136)||(36675642-36675718)
chr8 (64-108)||(29525713-29525757)
[»] chr3 (8 HSPs)
chr3 (65-143)||(35637268-35637348)
chr3 (62-160)||(2663226-2663326)
chr3 (76-160)||(49323209-49323295)
chr3 (62-176)||(3984434-3984550)
chr3 (62-115)||(28212602-28212655)
chr3 (62-133)||(46411190-46411263)
chr3 (72-112)||(35637072-35637112)
chr3 (73-112)||(54513994-54514033)
[»] chr7 (3 HSPs)
chr7 (62-143)||(24879130-24879213)
chr7 (62-143)||(48065050-48065132)
chr7 (73-112)||(37025612-37025651)
[»] chr4 (2 HSPs)
chr4 (65-159)||(31799309-31799406)
chr4 (83-153)||(50470025-50470098)
[»] chr6 (1 HSPs)
chr6 (65-125)||(21508443-21508505)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 25628825 - 25629044
Alignment:
Q  11 acttaattaggatcattatgcatttgatagatgcaaggcacttatccggatatattcttgtatgaactctcacccaacacatcattcttacacccaacca 110  Q
    ||||||||||||||||   |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  25628825 acttaattaggatcat---gcatttgatagatgcaaggcacttatctcgatatattcttgcatgaactctcacccaacacattatttttacacccaacca 25628921  T
Q  111 at--aaatatgacacatgttattaacttttaaaaagtgtaattttcattaagaaaacataaacataaacgggagccttaactgtccctttctctcttttg 208  Q
    ||  |||||||| |||| ||||||||||| |||| ||| |||||| ||||||       ||||| |||| |||||||||| || |||  |||||||||||    
T  25628922 ataaaaatatgatacatattattaactttaaaaaggtgaaattttaattaag------gaaacagaaaccggagccttaaatgcccc--tctctcttttg 25629013  T
Q  209 tcgtggtttctctctgtaacaatggtttcat 239  Q
    ||||||||||||| |||||||||||||||||    
T  25629014 tcgtggtttctctatgtaacaatggtttcat 25629044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 39823028 - 39822923
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttt-taaaaagtgtaattttcatta 158  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||  ||||||||| ||||| ||||    
T  39823028 atattattgcatcaactctcacccaacacatcattcttacacccaaccaataaaaatatgacacatgttattaaatttaaaaaaagtgtgattttaatta 39822929  T
Q  159 agaaaa 164  Q
    ||||||    
T  39822928 agaaaa 39822923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 5737196 - 5737296
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaata--tgacacatgttattaacttttaaaaagtgtaattttcattaa 159  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||| |||||| |  |||||  ||||||||||||| |||||| || |||||||||||    
T  5737196 atattcttacatgaactctcatccaacacatcattcttacacccaacaaataaaaaattgacatctgttattaactttaaaaaagagtgattttcattaa 5737295  T
Q  160 g 160  Q
    |    
T  5737296 g 5737296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 18058772 - 18058873
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaa-aaagtgtaattttcatta 158  Q
    ||||||||| ||||||||||||||||||||| ||||||||||   || |||  ||||||||||||||||||||||||| || ||||||| ||||| ||||    
T  18058772 atattcttgcatgaactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaactttaaataaagtgtgattttaatta 18058871  T
Q  159 ag 160  Q
    ||    
T  18058872 ag 18058873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 13466955 - 13466859
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaataaa--tatgacacatgttattaacttttaaa---aagtgtaattttcattaagaaaa 164  Q
    |||| ||||| ||||||||| ||||||||||  ||||||||||  ||||||| || |||||||||||||||   |||||| ||||| ||||||||||    
T  13466955 tgaattctcatccaacacataattcttacactaaaccaataaaaatatgacatatattattaacttttaaaaataagtgtgattttaattaagaaaa 13466859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 18059044 - 18059005
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  18059044 tgaactcttacccaacacatcattcttacacccaaccaat 18059005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 39822751 - 39822790
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  39822751 tgaactcttaccaaacacatcattcttacacccaaccaat 39822790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 43146478 - 43146378
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaagtgtaattttcattaa 159  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  43146478 atattcttacatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaagtgtgattttaattaa 43146379  T
Q  160 g 160  Q
    |    
T  43146378 g 43146378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 38089109 - 38089009
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaagtgtaattttcattaa 159  Q
    ||||||||| || |||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||| ||  ||||| ||| ||||| |||||    
T  38089109 atattcttgcatcaactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaatttaaaaaaaatgtgattttaattaa 38089010  T
Q  160 g 160  Q
    |    
T  38089009 g 38089009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 29668648 - 29668548
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttt-taaaaagtgtaattttcatta 158  Q
    ||||||||| ||||||||||||| ||||||| ||||||||| |||||||||  |||||||||||||||| ||||||||  ||||||||| ||||| ||||    
T  29668648 atattcttgcatgaactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaactttaaaaaaagtgtgattttaatta 29668550  T
Q  159 ag 160  Q
    ||    
T  29668549 ag 29668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 2134884 - 2134801
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||| |||||||  ||| |||||||||||| |||||||| |||||    
T  2134884 atattcttgcatgaactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaactttaaaaaa 2134801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 20256899 - 20256981
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaacca-ataaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| || |||||||| |||||||||  |||||||||||||| | | ||||||||||||||||||||||||| |||||    
T  20256899 atattcttgcataaactctcatccaacacatttttcttacacccaacaataaaaatatgacacatgttattaactttaaaaaa 20256981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 32433647 - 32433719
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    |||||||| ||||||||||||||||||||||| | | |||  | |||||||||||||||||||| || |||||    
T  32433647 tgaactctaacccaacacatcattcttacacctatctaattaacatatgacacatgttattaaccttaaaaaa 32433719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 33861586 - 33861616
Alignment:
Q  73 tgaactctcacccaacacatcattcttacac 103  Q
    |||||||||||||||||||||||||||||||    
T  33861586 tgaactctcacccaacacatcattcttacac 33861616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 36384450 - 36384351
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat-aaatatgacacatgttattaacttttaaaaagtgtaattttcattaag 160  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||| ||||||||| ||||| ||||||    
T  36384450 atatttttgtatgaactctcacccaacacatcattcttacacccaaccaataaaaaataacatatgttattaactttaaaaaagtgtgattttaattaag 36384351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19563357 - 19563440
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  19563357 atattcttgcataaactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaacttttaaaaa 19563440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 43824196 - 43824279
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  43824196 atattcttgcatcaactctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaactttaaaaaa 43824279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 41677732 - 41677815
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat---aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||| ||||||   ||| |||| |||||||||||||||| |||||    
T  41677732 atattcttgcatgaactctcactcaatacatcattcttacaccc-accaataagaaaaatgatacatgttattaactttaaaaaa 41677815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 37028557 - 37028610
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaa 115  Q
    ||||||||| || |||||||||| || |||||||||||||||||||||||||||    
T  37028557 atattcttgcatcaactctcaccgaatacatcattcttacacccaaccaataaa 37028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 47459230 - 47459163
Alignment:
Q  78 tctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||| ||||||| ||||||||| |||||||||  ||| ||||||||||||||||||||| |||||    
T  47459230 tctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttattaactttaaaaaa 47459163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 18283310 - 18283369
Alignment:
Q  68 ttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacat 125  Q
    ||||||||||||||||||||||||||||| |||||| |  |||||  |||||||||||||    
T  18283310 ttgtatgaactctcacccaacacatcatttttacactctgccaatgaaaatatgacacat 18283369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 47458971 - 47459010
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  47458971 tgaactcttactcaacacatcattcttacacccaaccaat 47459010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 9305364 - 9305248
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaa--tatgacacatgttattaacttttaaaaagtgtaattttcattaa 159  Q
    ||||| ||| ||| ||||||||||||||||| |||||||||| |||||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||    
T  9305364 atattattgcatggactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaactttaaaaaagtgtgattttaattaa 9305265  T
Q  160 gaaaacataaacataaa 176  Q
    | ||| | |||||||||    
T  9305264 ggaaataaaaacataaa 9305248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 30233934 - 30233835
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat-aaatatgacacatgttattaacttt-taaaaagtgtaattttcattaa 159  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||| ||||| |||||    
T  30233934 atattcttgcatgaactctcacctaacacatcattcttacacccaaccaataaaaaatgacacatgttattaactttaaaaaaagtgtgattttaattaa 30233835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 29526001 - 29525917
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaag 144  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  29526001 atattcttgcatgaactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaag 29525917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 35162989 - 35163090
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttt-taaaaagtgtaattttcatta 158  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||  ||||||||| ||||| ||||    
T  35162989 atattcttgcatgaactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaatta 35163088  T
Q  159 ag 160  Q
    ||    
T  35163089 ag 35163090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 41775075 - 41774973
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat---aaatatgacacatgttattaacttt-taaaaagtgtaattttcatt 157  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||| |||   ||| ||||||||||||||| |||||  ||||||||| ||||| |||    
T  41775075 atattcttgcatgaactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatttactttaaaaaaagtgttattttaatt 41774976  T
Q  158 aag 160  Q
    |||    
T  41774975 aag 41774973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 36675642 - 36675718
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaactt 136  Q
    ||||||||| ||| | |||||||||| |||| |||||||||||||||||||  ||||||||||||| ||||||||||    
T  36675642 atattcttgcatgcattctcacccaatacattattcttacacccaaccaataaaaatatgacacatattattaactt 36675718  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 29525713 - 29525757
Alignment:
Q  64 attcttgtatgaactctcacccaacacatcattcttacacccaac 108  Q
    |||||| | |||||||| |||||||||| ||||||||||||||||    
T  29525713 attcttatgtgaactcttacccaacacaacattcttacacccaac 29525757  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 35637348 - 35637268
Alignment:
Q  65 ttcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  35637348 ttcttgcatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaa 35637268  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 2663226 - 2663326
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat-aaatatgacacatgttattaacttt-taaaaagtgtaattttcattaa 159  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||  ||||||||| ||||| |||||    
T  2663226 atattcttgtatgaactctcactcaacacatcattcttacaccaaaccaataaaaaatgacatatgttattaactttaaaaaaagtgtgattttaattaa 2663325  T
Q  160 g 160  Q
    |    
T  2663326 g 2663326  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 49323295 - 49323209
Alignment:
Q  76 actctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaagtgtaattttcattaag 160  Q
    |||||||| |||||||||||||||||||| |||||||  ||| |||||||||||| |||||||| ||||||||| ||||| ||||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgttgttaactttaaaaaagtgtgattttaattaag 49323209  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 3984434 - 3984550
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaata--tgacacatgttattaacttttaaaaagtgtaattttcattaa 159  Q
    ||||||||  ||||| ||||||| || |||||||||||| || | ||||||||| |  |||||||||||||||||||| ||||||||| ||||| | |||    
T  3984434 atattctttgatgaattctcaccaaagacatcattcttaaactcgaccaataaaaaaatgacacatgttattaactttaaaaaagtgtgattttaactaa 3984533  T
Q  160 gaaaacataaacataaa 176  Q
    | ||| | |||||||||    
T  3984534 ggaaatagaaacataaa 3984550  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 28212602 - 28212655
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaa 115  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  28212602 atattcttgcataaactctcatccaacacatcattcttacacccaaccaataaa 28212655  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 46411263 - 46411190
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaa 133  Q
    ||||||||| |||| |||  ||||||||||| |||||||||||| ||||||  | |||||||||||||||||||    
T  46411263 atattcttgcatgagctcctacccaacacattattcttacacccgaccaatagagatatgacacatgttattaa 46411190  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 35637072 - 35637112
Alignment:
Q  72 atgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  35637072 atgaactcttacccaacacatcatttttacacccaaccaat 35637112  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 54513994 - 54514033
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  54513994 tgaactctcacccaacacatcattcttacatccaatcaat 54514033  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 24879213 - 24879130
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttttaaaaa 143  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| | ||||  |||||||||| |||||||||||||| |||||    
T  24879213 atattcttgcatgaactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaactttaaaaaa 24879130  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 48065132 - 48065050
Alignment:
Q  62 atattcttgtatgaactctcacccaacacatcattcttacacccaaccaataaa--tatgacacatgttattaacttttaaaaa 143  Q
    ||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  48065132 atatttttgcatgaactctcatc-aacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaa 48065050  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 37025651 - 37025612
Alignment:
Q  73 tgaactctcacccaacacatcattcttacacccaaccaat 112  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  37025651 tgaactctcacccaacacatcattcttacactcatccaat 37025612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 31799406 - 31799309
Alignment:
Q  65 ttcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacatgttattaacttt-taaaaagtgtaattttcattaa 159  Q
    |||||| ||||||||||||| ||||||||||||||| || ||| ||||  ||| |||||||||||||||||||||  ||||||||| ||||| |||||    
T  31799406 ttcttgcatgaactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaactttaaaaaaagtgtgattttaattaa 31799309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 50470025 - 50470098
Alignment:
Q  83 cccaacacatcattcttacacccaaccaataaa--tatgacacatgttattaacttt-taaaaagtgtaatttt 153  Q
    |||||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||    
T  50470025 cccaacacattattcttacatccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtaatttt 50470098  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 21508443 - 21508505
Alignment:
Q  65 ttcttgtatgaactctcacccaacacatcattcttacacccaaccaat--aaatatgacacat 125  Q
    |||||| ||||||||| |||||||| || |||||||||| ||||||||  |||||||||||||    
T  21508443 ttcttgcatgaactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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