View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_2 (Length: 642)
Name: NF17050_low_2
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 212 - 636
Target Start/End: Complemental strand, 32356106 - 32355674
Alignment:
| Q |
212 |
tcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatgttgcat-----gtgtgcaatgctctagtttgctaaaata |
306 |
Q |
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| T |
32356106 |
tcatcactttcatcttttataccagcttctattatgacaattttactacttttcacacatgttgcattgcatgtgtgcaatgctctagtttgctaaaata |
32356007 |
T |
|
| Q |
307 |
aatggtactccaattatgtcgagagtttgctataatattaccatctgactgtgtgt------tgnnnnnnnnnnaatgaaccagatgtcctttaccactt |
400 |
Q |
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|| ||||||||| || || |||||||||||||| | ||||||||| || ||| | |||| ||||||||| |||| |||||| |
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| T |
32356006 |
aagggtactccagttgtgcttttagtttgctataataatgccatctgaccgtctgtaattccttgtgttatcataatggaccagatgttctttgccactt |
32355907 |
T |
|
| Q |
401 |
cattattgcatgcccacctcatgcaatgggatgataataatttggttgagcaagctgttaataaatgcaatgagattagggagtcaatttagccaaataa |
500 |
Q |
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| T |
32355906 |
cattattgcatgcccacctcatgcaatgggatgatgataatttggttgagcaagctgttaataaatgcaatgagatttgggagtcaattcagccagataa |
32355807 |
T |
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| Q |
501 |
agtgagtgttaaggttctttagcttcttgcttttctgcgtgtagacaatacacaccgactgacatgtgcatgtttgcaactgaactctaccatgattcct |
600 |
Q |
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| T |
32355806 |
agtgagtgccaatgttctttagtttcttgcttttct--gtgtagacactatacacccacagacatgtgcatgtttgcaactgaactcttccacgagtcct |
32355709 |
T |
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| Q |
601 |
tttttattttaatctaacgcttccctcctttgcttc |
636 |
Q |
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| T |
32355708 |
tttttaacttaatctaacacttccct-ctttgcttc |
32355674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 181 - 322
Target Start/End: Complemental strand, 33580832 - 33580691
Alignment:
| Q |
181 |
ccctttcttctttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatgttgcatgt |
280 |
Q |
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| T |
33580832 |
ccctttcttctttccttcccttattcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcactcatgttgcatgt |
33580733 |
T |
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| Q |
281 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
322 |
Q |
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| T |
33580732 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
33580691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 33581001 - 33580930
Alignment:
| Q |
13 |
cttctctgctctttgcatctgattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
84 |
Q |
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| T |
33581001 |
cttctctgctctttgcatccgattcattagttcacttaattcttacaactaattggtagaaccttctggaag |
33580930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 32356301 - 32356238
Alignment:
| Q |
21 |
ctctttgcatctgattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
84 |
Q |
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| T |
32356301 |
ctctttgcatccgattcattagtttacttaattcttacaactaatacgtagaaccttctggaag |
32356238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 493
Target Start/End: Complemental strand, 42302776 - 42302664
Alignment:
| Q |
382 |
cagatgtcctttaccacttcattattgcatgcccacctcatgcaatgggatgataataatttggttgagcaagctgttaataaatgcaa-tgagattagg |
480 |
Q |
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| T |
42302776 |
cagatgttctttgccacttcaatattgcattttgacctcatgtaacgagatgatactaattttgtagagaaagttgttaataagtgcaaatgagatttgg |
42302677 |
T |
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| Q |
481 |
gagtcaatttagc |
493 |
Q |
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| T |
42302676 |
gagtcaatttagc |
42302664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 382 - 535
Target Start/End: Complemental strand, 17922065 - 17921912
Alignment:
| Q |
382 |
cagatgtcctttaccacttcattattgcatgcccacctcatgcaatgggatgataataatttggttgagcaagctgttaataaatgcaatgagattaggg |
481 |
Q |
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||||||| |||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| ||| |
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| T |
17922065 |
cagatgttcttttccacttcattattgcatgcttgcctaatgcatacggatgataatagtttggttgctcaagctattaataaatgcaatgagatttggg |
17921966 |
T |
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| Q |
482 |
agtcaatttagccaaataaagtgagtgttaaggttctttagcttcttgcttttc |
535 |
Q |
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| T |
17921965 |
agtcaattctgcctgatcaagtgagtgcaaatattctttaacttcttgcttttc |
17921912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 17969315 - 17969247
Alignment:
| Q |
191 |
tttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttactt |
259 |
Q |
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||||||| |||| |||| |||| ||||||||||||||||||| | ||||||||| ||||||| ||||| |
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| T |
17969315 |
tttccttatcttattctttactcgtcactttcatcttttatacgttcttctattacgacaattctactt |
17969247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 617
Target Start/End: Complemental strand, 17955692 - 17955594
Alignment:
| Q |
514 |
gttctttagcttcttgcttttctgcgtgtagacaatacacaccgactgacatgtgcatgtttgcaactgaactctaccatgattccttttttattttaat |
613 |
Q |
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| T |
17955692 |
gttctttaacatcttgcttttccgtttgtggacaatgtacacccacagacatgtgcatgtttgcaactaa-----accatgattccgtttttaatttaat |
17955598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 17969103 - 17969054
Alignment:
| Q |
562 |
acatgtgcatgtttgcaactgaactctaccatgattccttttttatttta |
611 |
Q |
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||||||| |||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
17969103 |
acatgtgtatgttttcaactgaacactactatgattccttttttaattta |
17969054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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