View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_23 (Length: 229)
Name: NF17050_low_23
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 33581197 - 33581007
Alignment:
| Q |
14 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
113 |
Q |
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| T |
33581197 |
ttttgttgaaggatttcaacgaagttgtggtcttgtaacttcaactcacagcttgcaaaggctttgtcaattgaaggagactaccgaggttaagtctccg |
33581098 |
T |
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| Q |
114 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
204 |
Q |
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| T |
33581097 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagttttgaaaggtttcaagaaaagacatctccttt |
33581007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 32356505 - 32356315
Alignment:
| Q |
14 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
113 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32356505 |
ttttattgaaggatttcaacaaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcaatctccg |
32356406 |
T |
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| Q |
114 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
204 |
Q |
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| T |
32356405 |
ccttagaatgtggatatgcctgtgctactgaagtacgctacccagagttgcaggttagtagtgaaaggctacaagaaaagacatctccttt |
32356315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 17922440 - 17922281
Alignment:
| Q |
14 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
113 |
Q |
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| T |
17922440 |
ttttgttaaaggttttcaatgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctctgtcaactgaaggagactaccggggttcagtctcgg |
17922341 |
T |
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| Q |
114 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagtt |
173 |
Q |
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| T |
17922340 |
ccatagaacgtggatatgtctgtgctagtaaagtaccctacccagagatgcaggttagtt |
17922281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 17956190 - 17956035
Alignment:
| Q |
14 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
113 |
Q |
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| T |
17956190 |
ttttgttaacggttttcaacgaagtggaggtcatgtaacatcaactccaagcttgcaaaagctttttcaaatgaaggagggtacccgagttcactctccc |
17956091 |
T |
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| Q |
114 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggtt |
169 |
Q |
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| T |
17956090 |
tcttagaacgttgacataactatgctactgaagtacgctatccagagttgctggtt |
17956035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 17969586 - 17969494
Alignment:
| Q |
14 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttca |
106 |
Q |
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| T |
17969586 |
ttttgttaaaggttttcaacaaagttttgttcttgcaacctcaacttacaacatgcaaatgcttcttcagctgattgagactacccgggttca |
17969494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 8024690 - 8024603
Alignment:
| Q |
86 |
gaaggagactaccggggttcagtctccgccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagtt |
173 |
Q |
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| T |
8024690 |
gaaggagactaccagggttcagtctcggccttagaacgtggatatgtctgtgctactaaagtaccctacccagagttgcaggttagtt |
8024603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 8024907 - 8024847
Alignment:
| Q |
29 |
tcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaag |
89 |
Q |
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| T |
8024907 |
tcaacgaagttgtggtcttgcaacttcaacttacagcttgcaaatgctttggcaactgaag |
8024847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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