View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17050_low_24 (Length: 224)
Name: NF17050_low_24
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 1037793 - 1037992
Alignment:
| Q |
1 |
tcatgataagtctctcctttgctatcaacttttgcaacttgatctttttgagagttttcttcttgaacttcttgaggcatagtcactttttgagcatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1037793 |
tcatgataagtctctcctttgctatcaacttttgtaacttgatctttttgagaattttcttcttgaactttttgaggcatagtcactttttgagcatctt |
1037892 |
T |
|
| Q |
101 |
ctttactttcaacatttgatttaggatcttgatcagaagtgttttgttgatccttttgatcatttacctcctcagctttattattattttcttgagttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037893 |
ctttactttcaacatttgatttaggatcttgatcagaagtgttttgttgatccttttgatcatttacctcctcagctttattattattttcttgagttgg |
1037992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University