View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_3 (Length: 559)
Name: NF17050_low_3
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 336 - 546
Target Start/End: Complemental strand, 28618276 - 28618059
Alignment:
| Q |
336 |
tacatggaagacaaggcaacaagagagacgaactc---------gaagataagatatctctgagcagcaaaaccaatctgacatacaccgcataagatac |
426 |
Q |
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| T |
28618276 |
tacatggaagacaaggcaaaaagagagacgaattcctagtcctagaagataagatatctctgagcaggaaaactattctgacatacacaacataagataa |
28618177 |
T |
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| Q |
427 |
aataggcagtacagcaatgtgagcacataacataaataccagaaggaaattcttccaagaatattttttattggttaaatattaaaacatcatgtgaaac |
526 |
Q |
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| T |
28618176 |
aataggcagcacagcaatgtgaccacaaaacagaaacaccagaagggaagtctt-caagact-ttttttattgcttaaatattaaaacatcatgtgaaat |
28618079 |
T |
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| Q |
527 |
atgggtgagattccaacttc |
546 |
Q |
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| T |
28618078 |
atgggtgagattccaacttc |
28618059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 490 - 548
Target Start/End: Complemental strand, 28615958 - 28615900
Alignment:
| Q |
490 |
ttttttattggttaaatattaaaacatcatgtgaaacatgggtgagattccaacttcat |
548 |
Q |
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| T |
28615958 |
ttttttattggttaaatattaaaacatcatgtgaaacatgggtgagattccaacatcat |
28615900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 28616370 - 28616283
Alignment:
| Q |
336 |
tacatggaagacaaggcaacaagagagacgaactc---------gaagataagatatctctgagcagcaaaaccaatctgacatacac |
414 |
Q |
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| T |
28616370 |
tacatggaagacaaggcaacaagagagatgaactcctagttctagaagataagatatctctgtgcagcaaaatcaatctgatatacac |
28616283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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