View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_5 (Length: 531)
Name: NF17050_low_5
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 50260564 - 50261047
Alignment:
| Q |
17 |
aacaacgagcgaaagttattatgagttggcctggaacactcatttgagcaagaaaaaataagcaacttaagcagattaaaggttgaggttgtaaactgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50260564 |
aacaacgagcgaaagttattatgagttggcctggaacactcatttgagcaagaaaaaataagcaacttaagcagattaaaggttgaggttgtaaactgtt |
50260663 |
T |
|
| Q |
117 |
tacaaacctcaacctcgaactttcagctagatcaagggtttaagctgaagccttcaagatgtgctgcttcaatggtttagtgtgacactgaccacgtgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50260664 |
tacaaacctcaacctcgaactttcagctagatcaagggtttaagctgaagccttcaagatgtgctgcttcaatggtttagtgtgacactgaccacgtgat |
50260763 |
T |
|
| Q |
217 |
ccacataaaactacaattatttatttatagtaaacataagatagattacatgaccaaatagtgtcatttgaacaatttatttgattgttatac-aaagtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
50260764 |
ccacataaaactacaattatttatttatagtaaacataagatagattacatgaccaaatagtgtcatttgaacaatttatttgatttttatacaaaagtg |
50260863 |
T |
|
| Q |
316 |
tatatgaaggatattgatggattattttatttcaaaaaatctagcaactcatacaaagtaccagccccgtacttttgggagtgcaaaccgtttaactgag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
50260864 |
tatatgaaggatattgatggattattttatttcaaaaaatctagcaactcatacacagtaccagccccgtacttttgggagtgcaaacaatttaattgag |
50260963 |
T |
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| Q |
416 |
ctggacctccaaaaataacgagccacaagaaaaagaaattagagttttacttttcccacctaatgtatttcctcgtgctcccta |
499 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |
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| T |
50260964 |
ctggacctccaaaagtaacaggcctcaagaaaaagaaattagagttttacttttcccgcctaatgtctttcctcgcgcgcccta |
50261047 |
T |
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