View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_6 (Length: 444)
Name: NF17050_low_6
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 21625342 - 21625729
Alignment:
| Q |
20 |
agcattggtttgatggggttggtttctcaagctgtttctgatggaggtcgacatgtgattgggtgagaaatgagcatcttcttccttatgatcgatttgt |
119 |
Q |
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| T |
21625342 |
agcattggtttgatggggttggtttctcaagctgtttctgatggaggtcgacatgtgattgggtgagaaatgagcatcttcttccttatgatcgatttgt |
21625441 |
T |
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| Q |
120 |
cttggtgatgatgttgttaatttatgctatttttattgtcattgtattgttgcagggttattccaaggacattgatgccaagagaggtaattttaggatt |
219 |
Q |
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| T |
21625442 |
cttggtgatgatgttgttaatttatgctatttttattgtcattgtattgttgcagggttattccaaggacattgatgccaagagaggtaattttaggatt |
21625541 |
T |
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| Q |
220 |
tgaaggaatttcattaatcatcattgcaaataaaagttaccataggagagaaaattatcaaatatac-tttccctttctaccacaatatgtgcttatttt |
318 |
Q |
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| T |
21625542 |
tgaaggaatttcattaatcatcattgcaaataaaagttaccataggagagaaaattatcaaatatacttttccctttctaccacaatatgtgcttatttt |
21625641 |
T |
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| Q |
319 |
gcttattttcttgttccaattctatgtatcatctttttaattaatttccaccttgcttttgttatccaaatatattgattttccattc |
406 |
Q |
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| T |
21625642 |
gcttattttcttgttccaattctatgtatcatctttttgattaatttacaccttgcttttgttatccaaatatattgattttccattc |
21625729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 40465860 - 40465797
Alignment:
| Q |
20 |
agcattggtttgatggggttggtttctcaagctgtttctgatggaggtcgacatgtgattgggt |
83 |
Q |
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| T |
40465860 |
agcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattgggt |
40465797 |
T |
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