View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17050_low_8 (Length: 405)
Name: NF17050_low_8
Description: NF17050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17050_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 38568747 - 38569124
Alignment:
| Q |
10 |
attatacttacgaagaaatgctgccaccccagatcctactgccaaatatacatatttcaaagaaacctgtaattaatttannnnnnnnnnnnnnnnngta |
109 |
Q |
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| T |
38568747 |
attatacttacgaagaaatgctgccaccccagatcctactgccaaatatacatatttcaaagaaacctgtaattaatttaatcatcatcatcatcatgta |
38568846 |
T |
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| Q |
110 |
actgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcgga |
209 |
Q |
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| T |
38568847 |
actgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcgga |
38568946 |
T |
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| Q |
210 |
cacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggtcac |
309 |
Q |
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| T |
38568947 |
cacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggtcac |
38569046 |
T |
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| Q |
310 |
ttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgat |
387 |
Q |
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| T |
38569047 |
ttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgat |
38569124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 38527446 - 38527522
Alignment:
| Q |
12 |
tatacttacgaagaaatgctgccaccccagatcctactgccaaatatacatatttcaaagaaacctgtaattaattt |
88 |
Q |
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| T |
38527446 |
tatacttacggagaaatgctgccaccccagatcctactgccaaatatacaaatttcaaagacacctgtaatcaattt |
38527522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 38527615 - 38527695
Alignment:
| Q |
291 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccga |
371 |
Q |
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|||||| |||||||| |||||| || |||| || ||||||| ||||||||||||| ||||||| |||||||||||||| |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccga |
38527695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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