View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17051_high_10 (Length: 443)

Name: NF17051_high_10
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17051_high_10
NF17051_high_10
[»] chr8 (3 HSPs)
chr8 (8-243)||(32569180-32569415)
chr8 (303-426)||(32569009-32569132)
chr8 (51-100)||(32569383-32569432)
[»] chr5 (3 HSPs)
chr5 (47-176)||(7402962-7403092)
chr5 (50-180)||(7309591-7309722)
chr5 (38-177)||(15514456-15514587)
[»] chr4 (4 HSPs)
chr4 (38-180)||(2386731-2386873)
chr4 (48-129)||(18940523-18940607)
chr4 (43-84)||(53654871-53654912)
chr4 (47-184)||(41481568-41481707)
[»] chr1 (2 HSPs)
chr1 (37-129)||(8415546-8415639)
chr1 (146-180)||(26350231-26350265)
[»] scaffold0041 (1 HSPs)
scaffold0041 (38-129)||(91324-91416)
[»] chr7 (1 HSPs)
chr7 (38-129)||(40874866-40874958)
[»] chr6 (1 HSPs)
chr6 (38-200)||(24463921-24464084)
[»] chr2 (1 HSPs)
chr2 (47-129)||(1690963-1691046)
[»] chr3 (1 HSPs)
chr3 (47-106)||(1996745-1996805)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 32569415 - 32569180
Alignment:
Q  8 cgaagaaaatatgtttaactactccaataaattaataaatgtattttatgtttagctaccccaataaaatatgtttagctagttcaataaatttatttgc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32569415 cgaataaaatatgtttaactactccaataaattaataaatgtattttatgtttagctaccccaataaaatatgtttagctacttcaataaatttatttgc 32569316  T
Q  108 gcaaagtttagagaaataaaatgtgcataaaattaccatttgtttaatagatttattttatcttattttgacactttcagtatcttcagcaattacaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  32569315 gcaaagtttagagaaataaaatgtgcataaaattaccatttgtttaatagatttattttatcttattttgacattttcagtatcttaagcaattacaaat 32569216  T
Q  208 acaattgttaacaataaaaattgcaaagagaaaact 243  Q
      | ||||||||||||||||||||||||||||||||    
T  32569215 ggagttgttaacaataaaaattgcaaagagaaaact 32569180  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 303 - 426
Target Start/End: Complemental strand, 32569132 - 32569009
Alignment:
Q  303 tcttcttatatttgaccacgctgtataaaattcgctagctccgtccctaattaaagatcaacaatcctcttataatcatctaataaataattaaattaaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32569132 tcttcttatatttgaccacgctgtataaaattcgctagctccgtcgctgattaaagatcaacaatcctcttataatcatctaataaataattaaattaaa 32569033  T
Q  403 aatattatcaacaaatagaattat 426  Q
    ||||||||||||||||||||||||    
T  32569032 aatattatcaacaaatagaattat 32569009  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 32569432 - 32569383
Alignment:
Q  51 ttttatgtttagctaccccaataaaatatgtttagctagttcaataaatt 100  Q
    |||| ||||||||||||| ||||||||||||||| ||| | |||||||||    
T  32569432 ttttgtgtttagctacccgaataaaatatgtttaactactccaataaatt 32569383  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 7403092 - 7402962
Alignment:
Q  47 tgtattttatgtttagctaccccaataaaatatgtttagctagt-tcaataaatttatttgcgcaaagtttagagaaataaaatgtgcataaaattacca 145  Q
    |||||||||||||||||||||  |||||||||||||||  || | | ||||| |||||||| || || || ||||||||||||| |  | || |||||||    
T  7403092 tgtattttatgtttagctaccttaataaaatatgtttaattattctaaataagtttatttgtgcgaaattaagagaaataaaatatttaaaagattacca 7402993  T
Q  146 tttgtttaatagatttattttatcttatttt 176  Q
     |||||||||||||||||||| |||||||||    
T  7402992 cttgtttaatagatttattttgtcttatttt 7402962  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 7309591 - 7309722
Alignment:
Q  50 attttatgtttagctaccccaataaaatatgtttagctagttcaa-taaatttatttgcgcaaagtttagagaaataaaatgtgcataaaattaccattt 148  Q
    |||||||||||  |||||||||| |||||||||||||||   ||| ||||||||||||  ||||||  |||||||||||||   || || |||| || ||    
T  7309591 attttatgtttcactaccccaatcaaatatgtttagctaccccaaataaatttatttgtacaaagtcaagagaaataaaatactcaaaagattatcactt 7309690  T
Q  149 gtttaatagatttattttatcttattttgaca 180  Q
    |||||| ||||||||||  |||||||||||||    
T  7309691 gtttaaaagatttatttggtcttattttgaca 7309722  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 15514587 - 15514456
Alignment:
Q  38 attaataaatgtattttatgtttagctaccccaataaaatatgtttagctagttcaa-taaatttatttgcgcaaagtttagagaaataaaatgtgcata 136  Q
    |||| ||| |||||||| ||||| |||| ||||||||||||| |   ||||  |||| ||| |||||||| ||||| || |||||||||||||           
T  15514587 attagtaagtgtattttgtgtttggctatcccaataaaatatatcgggctacctcaaataagtttatttgtgcaaaattaagagaaataaaat------- 15514495  T
Q  137 aaattaccatttgtttaatagatttattttatcttattttg 177  Q
      |||||||||||||||| ||||||||||| ||||||||||    
T  15514494 --attaccatttgtttaaaagatttattttgtcttattttg 15514456  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 2386731 - 2386873
Alignment:
Q  38 attaataaatgtattttatgtttagctacccc-aataaaatatgtttagctagttcaa-taaatttatttgcgcaaagtttagagaaataaaatgtgcat 135  Q
    |||| ||| |||||||| ||| |||||||||| |||||||||| ||||||||   ||| ||| |||||||| ||||| |  ||||||||||||| | ||     
T  2386731 attagtaagtgtattttgtgtctagctacccccaataaaatatatttagctaccccaaataagtttatttgtgcaaaatcaagagaaataaaatattca- 2386829  T
Q  136 aaaattaccatttgtttaatagatttattttatcttattttgaca 180  Q
     | ||||||| |||||||| ||||||||||| |||||||||||||    
T  2386830 -agattaccacttgtttaaaagatttattttgtcttattttgaca 2386873  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 18940523 - 18940607
Alignment:
Q  48 gtattttatgtttagctaccccaataaaatatgtttagctagttc---aataaatttatttgcgcaaagtttagagaaataaaat 129  Q
    |||||||||||||||||||||| ||||||||||||||||||   |   ||||| |||||||| ||||||||  ||||||||||||    
T  18940523 gtattttatgtttagctacccctataaaatatgtttagctacaccaaaaataagtttatttgtgcaaagttatgagaaataaaat 18940607  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 53654912 - 53654871
Alignment:
Q  43 taaatgtattttatgtttagctaccccaataaaatatgttta 84  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  53654912 taaatgtattttatgtttagctactccaataaaatatattta 53654871  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 41481568 - 41481707
Alignment:
Q  47 tgtattttatgtttagctaccccaataaaatat-gtttagctagttc-aataaatttatttgcgcaaagtttagagaaataaaatgtgcataaaattacc 144  Q
    ||||||||||||||||||||| |||||||||||  |||| ||| ||| ||||||| ||||||   ||||||  || |||||| |||   | || |||| |    
T  41481568 tgtattttatgtttagctacctcaataaaatatattttaactatttcaaataaatatatttgtcgaaagttaggataaataagatgcttaaaagattatc 41481667  T
Q  145 atttgtttaatagatttattttatcttattttgacacttt 184  Q
    | |||||| ||||||||||||  |||||||| ||||||||    
T  41481668 aattgtttgatagatttatttggtcttatttcgacacttt 41481707  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 8415639 - 8415546
Alignment:
Q  37 aattaataaatgtattttatgtttagctaccccaataaaatatgtttagcta-gttcaataaatttatttgcgcaaagtttagagaaataaaat 129  Q
    ||||| |||||||| |||||||||| ||| ||||||||||||| ||||||||   | ||||| |||||||| |||||||| |||||||||||||    
T  8415639 aattagtaaatgtactttatgtttatctatcccaataaaatatatttagctaccctaaataagtttatttgtgcaaagttaagagaaataaaat 8415546  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 26350265 - 26350231
Alignment:
Q  146 tttgtttaatagatttattttatcttattttgaca 180  Q
    |||||||||||||||||||||||||||| ||||||    
T  26350265 tttgtttaatagatttattttatcttatattgaca 26350231  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 91324 - 91416
Alignment:
Q  38 attaataaatgtattttatgtttagctaccccaataaaatatgtttagctagttca-ataaatttatttgcgcaaagtttagagaaataaaat 129  Q
    |||| |||||||| ||||||||||||||||||  |||||||| |||||| | |||| |||| |||||||| | ||| || |||||||||||||    
T  91324 attattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaat 91416  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 40874958 - 40874866
Alignment:
Q  38 attaataaatgtattttatgtttagctaccccaataaaatatgtttagctagttca-ataaatttatttgcgcaaagtttagagaaataaaat 129  Q
    |||| |||||||| ||||||||||||||||||  |||||||| |||||| | |||| |||| |||||||| | ||| || |||||||||||||    
T  40874958 attattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaat 40874866  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 24463921 - 24464084
Alignment:
Q  38 attaataaatgtattttatgtttagctaccccaataaaatatgtttagctagttc-aataaatttatttgcgcaaagtttagagaaataaaatgtgcata 136  Q
    |||||||| |||| ||||| |||||||| ||||| ||||||| ||||  || |   ||||  ||| |||| | |||||| |||||||||||||   || |    
T  24463921 attaataagtgtactttatatttagctatcccaacaaaatatatttaaatactcagaatatgtttgtttgtgtaaagttaagagaaataaaatactcaaa 24464020  T
Q  137 aaattaccatttgtttaatagatttattttatcttattttgacactttcagtatcttcagcaat 200  Q
    | |||| ||||||||||| ||||||||||| | ||||||||||  ||||  |||||| ||||||    
T  24464021 agattatcatttgtttaagagatttattttgttttattttgacgttttcgatatcttaagcaat 24464084  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 1690963 - 1691046
Alignment:
Q  47 tgtattttatgtttagctaccccaataaaatatgtttagctagttc-aataaatttatttgcgcaaagtttagagaaataaaat 129  Q
    |||||||| ||||||||| |||||||||||||| |||| |||  || ||||| ||| |||  |||||||| |||||||||||||    
T  1690963 tgtattttgtgtttagctgccccaataaaatatatttatctacctcaaataagtttctttatgcaaagttaagagaaataaaat 1691046  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 1996805 - 1996745
Alignment:
Q  47 tgtattttatgtttagctaccccaataaaatatgtttagctagttc-aataaatttatttg 106  Q
    |||||||| |||||| |||| |||||||||||| |||||||| ||| ||||| ||||||||    
T  1996805 tgtattttgtgtttaactactccaataaaatatatttagctatttcaaataagtttatttg 1996745  T

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