View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_11 (Length: 440)
Name: NF17051_high_11
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 41729785 - 41730193
Alignment:
| Q |
17 |
acatcaactttagcttcttcttgcatcttcatccacacataattttcatcctcaaccttctcagattgttccacaactgaacttgtatgcaaggtgttga |
116 |
Q |
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| T |
41729785 |
acatcaactttagcttcttcctgcatcttcatccacacataattttcatcctcaaccttttcggattgttccacaactgaacttgtatgcaaggtgttga |
41729884 |
T |
|
| Q |
117 |
tcccatatctggaacttggtgtgaagaatttttcacatgaatgatcatcatgaggtaaaagattctttgaattagtatcaacaggagaagaaacagacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729885 |
tcccatatctggaacttggtgtgaagaatttttcacatgaatgatcatcatgaggtaaaagattctttgaattagtatcaacaggagaagaaacagacat |
41729984 |
T |
|
| Q |
217 |
gaagtgatgagattgagatttaaggtggctaagagaaagaagtgaccannnnnnnggtgttggacttggattgacaaagaaattgagtaatcgtcctttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| || |
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| T |
41729985 |
gaagtgatgagattgagatttaaggtggctaagagaaagaagtgaccattt------ttttggtgttggattgacaaagaaattgagtaatcgtcctctc |
41730078 |
T |
|
| Q |
317 |
ttcatggtaataactttgtttgattgaagatctgagaaaattagtcaaaggttaacactcagcagaaagcacattatggtcctatagtgtttcatttcat |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41730079 |
ttcatggtaataactttgtttgattgaagatctaagaaaattagtcaaagattaacactcagcagaaagcacattatagtcctatagtgtttcatttcat |
41730178 |
T |
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| Q |
417 |
tgtatatagtataat |
431 |
Q |
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| T |
41730179 |
tgtatatagtataat |
41730193 |
T |
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