View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_13 (Length: 386)
Name: NF17051_high_13
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_13 |
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| [»] scaffold1291 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 40413720 - 40413364
Alignment:
| Q |
17 |
ttccaaatgggtgttattggtgcattgtttctctcagtagcttcttctgtctccattgtcatatgcaacaaagccttgatgagcaagcttggcttccctt |
116 |
Q |
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| T |
40413720 |
ttccaattgggtgttattggtgcattgtttctctcagtagcttcttctgtctccattgtcatatgcaacaaagccttgatgagcaagcttggcttccctt |
40413621 |
T |
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| Q |
117 |
ttggtaagtcgtaataatcaatttgtttctcactaactttattattcataattattctactaactttaaattatgattttgatttgggtcagctacaacg |
216 |
Q |
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| T |
40413620 |
ttggtaagtcgtaataatcattttgtttctcactaactttattattcataattattctactaactttaaattatgattttgatttgggtcagctacaacg |
40413521 |
T |
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| Q |
217 |
cttacaagttggcatttgatggtcacattttgtacacttcatgtggctcaacgtctaaacttgttcgtgaccaaatccattgacatgaaaacaatcatgc |
316 |
Q |
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| T |
40413520 |
cttacaagttggcatttgatggtcacattttgtacacttcatgtggctcaacgtctaaacttgttcgtcaccaaatccattgacatgaaaacgatcatgc |
40413421 |
T |
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| Q |
317 |
tttttggatttttaaatggtgtttccattggatttctcaacttgagtcttggattca |
373 |
Q |
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| T |
40413420 |
tttttggatttttaaatggtgtttccattggatttctcaacttgagtcttggattca |
40413364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1291 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold1291
Description:
Target: scaffold1291; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 1633 - 1981
Alignment:
| Q |
18 |
tccaaatgggtgttattggtgcattgtttctctcagtagcttcttctgtctccattgtcatatgcaacaaagccttgatgagcaagcttggcttcccttt |
117 |
Q |
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| T |
1633 |
tccaattgggtgttattggtgcattgtttctctcagtagcttcttctgtctccattgtcatctgcaacaaagccttgatgagcaagcttggcttcccttt |
1732 |
T |
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| Q |
118 |
tggtaagtcgtaataatcaatttgtttctcactaactttattattcataattattctactaactttaaattatgattttgatttgggtcagctacaacgc |
217 |
Q |
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| T |
1733 |
tggtaagtcgtaataatcattttgtttctatccca----ataatttat---tattctactaactttaaattatgattttgatttgggtcagctacaacgc |
1825 |
T |
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| Q |
218 |
ttacaagttggcatttgatggtcacattttgtacacttcatgtggctcaacgtctaaacttgttcgtgaccaaatccattgacatgaaaacaatcatgct |
317 |
Q |
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| T |
1826 |
ttacaagttggcatttgatggtcacattttgtacacttcatgtggctcaacgtctaaacttgttcgtgaccaaatcaattgacatgaaaacaatcatgct |
1925 |
T |
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| Q |
318 |
ttttggatttttaaatggtgtttccattggatttctcaacttgagtcttggattca |
373 |
Q |
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| T |
1926 |
ttttggatttttaaatggtgtttccattggatttctcaacttgagtcttggattca |
1981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 373
Target Start/End: Original strand, 21682477 - 21682644
Alignment:
| Q |
206 |
cagctacaacgcttacaagttggcatttgatggtcacattttgtacacttcatgtggctcaacgtctaaacttgttcgtgaccaaatccattgacatgaa |
305 |
Q |
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| T |
21682477 |
cagccacaacacttacaagttggcatttgatggttactttttgcacccttcatgtggctctacgtttcaatctgtttgaggccaaacctgttgacatgaa |
21682576 |
T |
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| Q |
306 |
aacaatcatgctttttggatttttaaatggtgtttccattggatttctcaacttgagtcttggattca |
373 |
Q |
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| T |
21682577 |
gactgtcatgctttttggtattctaaatggtgtctccattggatttctcaacttgagccttggcttca |
21682644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 21682286 - 21682370
Alignment:
| Q |
24 |
tgggtgttattggtgcattgtttctctcagtagcttcttctgtctccattgtcatatgcaacaaagccttgatgagcaagcttgg |
108 |
Q |
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| T |
21682286 |
tgggggttattggtgcactattcctttctgtggcttcctcagtctccattgtcatatgcaacaaagccttaatgagcaatcttgg |
21682370 |
T |
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