View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_15 (Length: 375)
Name: NF17051_high_15
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 46598142 - 46597768
Alignment:
| Q |
13 |
aatatacaactctattatttccttttacctttaatttatataaaaatagagtaatacattatttttattctattgtttgtatctatgctcatttcaaact |
112 |
Q |
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| T |
46598142 |
aatatacaactctattatttctttttacctttaatttatataaaaatagagtaatacattatttttagtctattgtttgtatctatgctcatttcaaact |
46598043 |
T |
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| Q |
113 |
---------ttattctcct---attgagagtggaaaatgatgaatttgcaacttgcaagagcttggagcctccataccaacatagcccaattaggaaatt |
200 |
Q |
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| T |
46598042 |
cttccaactttattctcctcctattgagagtggaaaatgatgaatttgcaacttgcaagagcttggagcctccataccaacatagcccaattaggaaatt |
46597943 |
T |
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| Q |
201 |
ggtgtttatagagcacaaatccgattcatcttttttcttattataccccactataaagaggaaagagcttattgcaagttgcaagcaatattattacgtg |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46597942 |
ggtgtttatagagcacaaacccgattcatcttttttcttattataccccactataaagaggaaagagcttattgcaagttgcaagcaatattattacgtg |
46597843 |
T |
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| Q |
301 |
gcagaataatcaacaaaattgcaagtacaaacaagattgtacggttttagctgtttggttaagatacagctaaat |
375 |
Q |
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| T |
46597842 |
gcagaataatcaacaaaattgcaagtacaaacaagattgtacggttttagctgtttggttaagatacagctaaat |
46597768 |
T |
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