View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_19 (Length: 297)
Name: NF17051_high_19
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 29779495 - 29779767
Alignment:
| Q |
18 |
cttcttctcaacatggctctagtcatcatgtgtgttttgtggcagttaactaaaaaggtgtttcttggttctcttcgggaggccgaggttgagaggctta |
117 |
Q |
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| T |
29779495 |
cttcttctcaacatggctctagtcatcatgtgtgttttgtggcagttaactaaaaaggtgtttcttggttctcttcgggaggccgaggttgagaggctta |
29779594 |
T |
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| Q |
118 |
atgagcaagcatggagggaggttatggaaatcctctttgcaattactatctttagacaggatttctctattacattccttgccatggttacggcactctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29779595 |
atgagcaagcatggagggaggttatggaaatcctctttgcaattactatctttagacaggatttctctattacattccttgccatggttacggcactctt |
29779694 |
T |
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| Q |
218 |
gttaatcaaggccttgcattggttggctcagaagagagtagagtacatagagactacaccttccgtgtctgtg |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29779695 |
gttaatcaaggccttgcattggttggctcagaagagagtagagtacatagagactacaccttccgtgtctgtg |
29779767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 1471348 - 1471601
Alignment:
| Q |
18 |
cttcttctcaacatggctctagtcatcatgtgtgttttgtggcagttaactaaaaaggtgtttcttggttctcttcgggaggccgaggttgagaggctta |
117 |
Q |
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|||||||| ||||||| | | || || ||||||||| ||||||| ||||||||||||| || | ||| |||||| ||||| |||||||||||||||| |
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| T |
1471348 |
cttcttcttaacatgggtttggttattatgtgtgttctgtggcaactaactaaaaaggtattcttgggtaatcttcgagaggctgaggttgagaggctta |
1471447 |
T |
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| Q |
118 |
atgagcaagcatggagggaggttatggaaatcctctttgcaattactatctttagacaggatttctctattacattccttgccatggttacggcactctt |
217 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| | || |
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| T |
1471448 |
atgagcaatcatggagggaggttatggagatcctctttgcgattactatttttaggcaggatttctcggttacattccttgcgatggtcacggcattgtt |
1471547 |
T |
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| Q |
218 |
gttaatcaaggccttgcattggttggctcagaagagagtagagtacatagagac |
271 |
Q |
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|||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
1471548 |
gttaattaaggctttgcattggttggctcaaaagagagtcgagtacatcgagac |
1471601 |
T |
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