View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_2 (Length: 795)
Name: NF17051_high_2
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 400 - 784
Target Start/End: Complemental strand, 32725161 - 32724771
Alignment:
| Q |
400 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacnnnnnnnnnnn-ggaacatctatgca |
498 |
Q |
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| T |
32725161 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacaaaaaaaaaaaaggaacaactatgca |
32725062 |
T |
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| Q |
499 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
598 |
Q |
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| T |
32725061 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
32724962 |
T |
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| Q |
599 |
taatacgtccaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttgaattgttacaaattcactagctgctcctagata |
698 |
Q |
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| T |
32724961 |
taatacgtgcaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttcaattgttacaaattcaacagctgctcctagata |
32724862 |
T |
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| Q |
699 |
caataaaacctagacctatattacatagaacatacactagtgaaa-----tgaacactcaaaataataaattaagttgctttttcatctca |
784 |
Q |
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| T |
32724861 |
caataaaacctagacctatattacatagaacatacactagtgaaatgaaatgaacactcaaaataataaattaagttgctttttcatctca |
32724771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 32726042 - 32725843
Alignment:
| Q |
20 |
agtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaacctcagtcaggtatgattgctcagcattcaagtagttgatg |
119 |
Q |
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| T |
32726042 |
agtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaaccacagtcaggtatgattgctcagcattcaagtagttgatg |
32725943 |
T |
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| Q |
120 |
gctttggagaagatgaatgaatggcatgccagcagcaagaggttttagattctcaaagtgtttgtatctgtatgtttgatgaagccaaagaattggaagt |
219 |
Q |
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| T |
32725942 |
gctttggagaagatgaacgaatgccatgccagcagcaagaggttttagattctcaaaatgtttgtatctgtatgtttgatgaagccaaagaattggaagt |
32725843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 32725793 - 32725721
Alignment:
| Q |
253 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttgtggagcatgaattc |
325 |
Q |
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| T |
32725793 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttatggagcatgaattc |
32725721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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