View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_27 (Length: 220)
Name: NF17051_high_27
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 12877233 - 12877052
Alignment:
| Q |
16 |
caaatatcgtatccacgtcgtacccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctcta |
115 |
Q |
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| T |
12877233 |
caaatatcgtatccacgtcgtacccaaaacattttgcactcaaactcatttggaagtctaagggatattggatttgatacatctttccaatatctctctg |
12877134 |
T |
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| Q |
116 |
caaaatttcttggaatcatctgcaagcacattttcaaaaaccaatgagtttcgactgtgatcgaaccagtaatgaagattaa |
197 |
Q |
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| T |
12877133 |
caaaatttcttggaatcatctgcaagcacattttcaaaaaccaatgagtttcgactgtgatcgaaccagtaatgaagattaa |
12877052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 12193541 - 12193680
Alignment:
| Q |
28 |
ccacgtcgtacccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttg |
127 |
Q |
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|||||| | ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12193541 |
ccacgttgaacccaaaacattttgcactcagactcgtttggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaattccttg |
12193640 |
T |
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| Q |
128 |
gaatcatctgcaagcacattttcaaaaaccaatgagtttc |
167 |
Q |
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| T |
12193641 |
gtatcatctgcatgcacatttttaaaaaccagtgagtttc |
12193680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 12908699 - 12908609
Alignment:
| Q |
66 |
tggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttggaatcatctgcaagcacattttcaaaaac |
156 |
Q |
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| T |
12908699 |
tggaagtttaagggatattggatttggtacatcattccaatatctctctgcaaaattccttggaatcatctgcaagcacgttttcaaaaac |
12908609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 12904296 - 12904424
Alignment:
| Q |
39 |
ccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttggaatcatctgc |
138 |
Q |
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||||||||||||||||||| | ||| ||||| | | || |||||||||||||| | |||||||||| | || |||||||| ||||||| ||||| | |
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| T |
12904296 |
ccaaaacattttgcactcatatccatttggaaattttagagatattggatttgacattcctttccaatacttgtccacaaaattccttggaaccatcttc |
12904395 |
T |
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| Q |
139 |
aagcacattttcaaaaaccaatgagtttc |
167 |
Q |
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| T |
12904396 |
aagcacattttcaaaaaccaatgagtttc |
12904424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 12895191 - 12895320
Alignment:
| Q |
29 |
cacgtcgtacccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttgg |
128 |
Q |
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||||| |||||||| |||||||||||| | |||| ||||| | | || ||||||||||||||||| |||||||||| | || |||||||||||||| |
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| T |
12895191 |
cacgtagtacccaattcattttgcactcggagtcatttggaaattttagagatattggatttgatactcctttccaatacttttccacaaaatttcttgg |
12895290 |
T |
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| Q |
129 |
aatcatctgcaagcacattttcaaaaacca |
158 |
Q |
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| T |
12895291 |
aaccatctgcaatcatattttcaaaaacca |
12895320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 12881368 - 12881504
Alignment:
| Q |
35 |
gtacccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttggaatcat |
134 |
Q |
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|||||||| ||||||||||||| | ||| ||||| | | || |||||||||||||| || |||||||||| |||| |||||||| ||||||| ||| |
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| T |
12881368 |
gtacccaattcattttgcactcagatccatttggaaattttagagatattggatttgaaactcctttccaatacttctccacaaaattccttggaagcat |
12881467 |
T |
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| Q |
135 |
ctgc----aagcacattttcaaaaaccaatgagtttc |
167 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
12881468 |
ctgcaagaaagcacattttcaaaaaccaatgagtttc |
12881504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 12888127 - 12888257
Alignment:
| Q |
28 |
ccacgtcgtacccaaaacattttgcactcaaactcatgtggaagtctaagggatattggatttgatacatctttccaatatctctctacaaaatttcttg |
127 |
Q |
| |
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|||||| |||||||| |||||| || ||| | |||| ||||| | | || ||||||||||||| ||||||||||||| | | || ||||||||||| | |
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| T |
12888127 |
ccacgtagtacccaattcattttacattcagaatcatttggaaattttagagatattggatttggtacatctttccaaaacttgtccacaaaatttctcg |
12888226 |
T |
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| Q |
128 |
gaatcatctgcaagcacattttcaaaaacca |
158 |
Q |
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||| |||||||||||| |||||||||||||| |
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| T |
12888227 |
gaaccatctgcaagcatattttcaaaaacca |
12888257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 21114859 - 21114767
Alignment:
| Q |
79 |
gatattggatttgatacatctttccaatatctctctacaaaatttcttggaatcatctgca----agcacattttcaaaaaccaatgagtttc |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
21114859 |
gatattggatttgatacatctttccaatatctctctacaaaattccttggaatcatctgcaagagagcacattttcaaaaacgaatgagtttc |
21114767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 54243216 - 54243263
Alignment:
| Q |
118 |
aaatttcttggaatcatctgcaagcacattttcaaaaaccaatgagtt |
165 |
Q |
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||||| ||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
54243216 |
aaattccttggaatcatttgcaagcacactttcaaaaaccaatgagtt |
54243263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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