View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17051_high_3 (Length: 686)

Name: NF17051_high_3
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17051_high_3
NF17051_high_3
[»] chr4 (36 HSPs)
chr4 (8-668)||(29778844-29779504)
chr4 (293-521)||(11302316-11302543)
chr4 (293-530)||(17898057-17898293)
chr4 (314-519)||(32817396-32817602)
chr4 (293-486)||(47514178-47514371)
chr4 (339-531)||(46507964-46508154)
chr4 (293-384)||(38716788-38716879)
chr4 (391-497)||(7206300-7206406)
chr4 (262-505)||(46382668-46382904)
chr4 (293-501)||(8849484-8849689)
chr4 (351-537)||(22250204-22250390)
chr4 (466-531)||(38740301-38740366)
chr4 (416-516)||(47733543-47733643)
chr4 (396-531)||(48575408-48575542)
chr4 (293-353)||(2256496-2256556)
chr4 (466-517)||(29468574-29468625)
chr4 (633-668)||(29778821-29778856)
chr4 (314-397)||(50500234-50500317)
chr4 (449-539)||(27096517-27096607)
chr4 (351-406)||(32818422-32818477)
chr4 (474-516)||(22694611-22694653)
chr4 (466-516)||(22699764-22699814)
chr4 (466-516)||(22980716-22980766)
chr4 (466-516)||(22994303-22994353)
chr4 (466-516)||(33843804-33843854)
chr4 (466-516)||(36150626-36150676)
chr4 (449-531)||(43868212-43868294)
chr4 (318-434)||(50024209-50024322)
chr4 (318-434)||(50031327-50031440)
chr4 (464-537)||(50945396-50945469)
chr4 (295-387)||(6099818-6099910)
chr4 (468-516)||(28947763-28947811)
chr4 (466-530)||(36639888-36639951)
chr4 (469-517)||(48045693-48045741)
chr4 (592-632)||(51555723-51555763)
chr4 (364-427)||(53796453-53796517)
[»] chr2 (29 HSPs)
chr2 (295-537)||(36306890-36307129)
chr2 (294-529)||(4007132-4007365)
chr2 (294-432)||(42650192-42650330)
chr2 (392-516)||(10918575-10918699)
chr2 (300-425)||(43987860-43987985)
chr2 (466-531)||(12110920-12110985)
chr2 (367-486)||(43717318-43717438)
chr2 (367-454)||(21234529-21234616)
chr2 (296-348)||(32631149-32631201)
chr2 (296-387)||(3551555-3551645)
chr2 (474-530)||(1763274-1763330)
chr2 (334-406)||(43969660-43969732)
chr2 (474-537)||(17140660-17140723)
chr2 (295-442)||(42871370-42871510)
chr2 (466-528)||(15220791-15220853)
chr2 (466-516)||(23359942-23359992)
chr2 (589-635)||(40667481-40667527)
chr2 (322-388)||(14716526-14716587)
chr2 (293-373)||(31785743-31785823)
chr2 (351-405)||(36706382-36706437)
chr2 (474-537)||(42650356-42650419)
chr2 (409-479)||(21234446-21234516)
chr2 (391-521)||(36937147-36937277)
chr2 (325-406)||(17797389-17797470)
chr2 (313-406)||(30503149-30503242)
chr2 (309-434)||(37047178-37047302)
chr2 (466-537)||(3853946-3854018)
chr2 (475-527)||(6767777-6767829)
chr2 (489-537)||(11759780-11759828)
[»] chr3 (30 HSPs)
chr3 (293-537)||(32111914-32112158)
chr3 (293-434)||(49829080-49829221)
chr3 (315-531)||(41115289-41115505)
chr3 (367-531)||(40339220-40339384)
chr3 (293-531)||(25129466-25129686)
chr3 (357-519)||(51167850-51168011)
chr3 (293-362)||(46870338-46870407)
chr3 (393-519)||(51151566-51151691)
chr3 (466-531)||(31766174-31766239)
chr3 (334-406)||(835854-835926)
chr3 (321-412)||(7742189-7742280)
chr3 (466-516)||(7012677-7012727)
chr3 (376-493)||(44489381-44489499)
chr3 (468-516)||(10852727-10852775)
chr3 (436-531)||(30958099-30958195)
chr3 (436-531)||(30973911-30974007)
chr3 (466-518)||(42644299-42644351)
chr3 (466-530)||(44225602-44225666)
chr3 (326-369)||(47101231-47101274)
chr3 (476-538)||(1441327-1441389)
chr3 (466-516)||(10853281-10853331)
chr3 (474-528)||(24916585-24916639)
chr3 (293-371)||(25579074-25579152)
chr3 (465-531)||(32523261-32523327)
chr3 (479-537)||(44958563-44958621)
chr3 (351-404)||(7717375-7717428)
chr3 (474-531)||(21023215-21023271)
chr3 (468-516)||(23918881-23918929)
chr3 (376-456)||(32245263-32245343)
chr3 (474-530)||(48089618-48089674)
[»] chr5 (37 HSPs)
chr5 (14-165)||(1471200-1471351)
chr5 (332-503)||(32421887-32422058)
chr5 (305-423)||(1879089-1879207)
chr5 (357-516)||(5969958-5970121)
chr5 (312-530)||(5465398-5465615)
chr5 (371-531)||(23647622-23647782)
chr5 (371-531)||(23810791-23810951)
chr5 (476-537)||(14299429-14299490)
chr5 (365-497)||(41606243-41606375)
chr5 (293-384)||(13505041-13505132)
chr5 (374-521)||(19563756-19563903)
chr5 (295-387)||(4150187-4150279)
chr5 (331-519)||(6095270-6095458)
chr5 (312-402)||(16919334-16919425)
chr5 (466-516)||(22811077-22811127)
chr5 (263-348)||(23647531-23647617)
chr5 (263-348)||(23810956-23811042)
chr5 (323-372)||(3233199-3233248)
chr5 (369-425)||(7667605-7667662)
chr5 (463-516)||(19784861-19784914)
chr5 (449-541)||(117413-117505)
chr5 (474-530)||(621291-621347)
chr5 (415-535)||(6988162-6988282)
chr5 (394-521)||(1105461-1105588)
chr5 (464-531)||(2868349-2868416)
chr5 (302-401)||(3227948-3228046)
chr5 (452-531)||(43438591-43438670)
chr5 (465-531)||(14671117-14671182)
chr5 (351-389)||(29922034-29922072)
chr5 (289-326)||(275257-275294)
chr5 (595-628)||(3977389-3977422)
chr5 (466-531)||(29922993-29923058)
chr5 (570-614)||(10391437-10391481)
chr5 (570-614)||(10771819-10771863)
chr5 (569-609)||(14706214-14706254)
chr5 (320-376)||(34449489-34449545)
chr5 (367-406)||(38592206-38592246)
[»] chr8 (27 HSPs)
chr8 (299-537)||(38516176-38516414)
chr8 (293-386)||(24774826-24774919)
chr8 (295-516)||(24183670-24183891)
chr8 (293-372)||(4344684-4344763)
chr8 (466-532)||(1373084-1373150)
chr8 (392-530)||(24776359-24776501)
chr8 (318-531)||(43361288-43361503)
chr8 (466-518)||(19649231-19649283)
chr8 (462-536)||(24095379-24095453)
chr8 (466-531)||(35495083-35495148)
chr8 (351-424)||(42624919-42624992)
chr8 (466-530)||(36779436-36779500)
chr8 (569-624)||(7714327-7714382)
chr8 (451-537)||(18355770-18355857)
chr8 (318-381)||(44121599-44121662)
chr8 (569-631)||(1889065-1889127)
chr8 (592-634)||(1892177-1892219)
chr8 (323-432)||(34462205-34462314)
chr8 (569-634)||(1664444-1664509)
chr8 (466-503)||(2764424-2764461)
chr8 (466-503)||(2778606-2778643)
chr8 (476-537)||(4336577-4336638)
chr8 (476-537)||(10368068-10368129)
chr8 (474-519)||(10552920-10552965)
chr8 (466-531)||(29970847-29970912)
chr8 (466-518)||(15206741-15206793)
chr8 (466-518)||(43550936-43550988)
[»] chr6 (19 HSPs)
chr6 (293-429)||(1872253-1872389)
chr6 (312-473)||(34805245-34805405)
chr6 (293-402)||(24803913-24804025)
chr6 (365-516)||(34800757-34800907)
chr6 (317-385)||(3816840-3816906)
chr6 (315-458)||(34776863-34776998)
chr6 (358-531)||(578915-579088)
chr6 (449-539)||(2493930-2494020)
chr6 (466-530)||(7952643-7952707)
chr6 (469-541)||(7953079-7953151)
chr6 (488-531)||(3525040-3525083)
chr6 (474-521)||(19260820-19260867)
chr6 (571-630)||(34429646-34429705)
chr6 (469-531)||(1499996-1500058)
chr6 (569-627)||(2455892-2455950)
chr6 (313-406)||(5724682-5724775)
chr6 (474-531)||(26692425-26692482)
chr6 (570-615)||(33080509-33080554)
chr6 (464-516)||(3816378-3816430)
[»] chr7 (24 HSPs)
chr7 (293-531)||(26984409-26984645)
chr7 (357-537)||(35105142-35105322)
chr7 (314-530)||(7168846-7169062)
chr7 (367-485)||(38453344-38453462)
chr7 (466-530)||(15311203-15311267)
chr7 (302-413)||(35812246-35812359)
chr7 (293-348)||(38453288-38453343)
chr7 (466-537)||(40491671-40491742)
chr7 (293-467)||(22915800-22915974)
chr7 (469-519)||(38510361-38510411)
chr7 (465-531)||(42481817-42481883)
chr7 (468-516)||(12306818-12306866)
chr7 (299-359)||(41787983-41788043)
chr7 (569-628)||(34950081-34950140)
chr7 (466-516)||(29829311-29829361)
chr7 (466-516)||(39634166-39634216)
chr7 (351-384)||(33076609-33076642)
chr7 (367-404)||(38123720-38123757)
chr7 (369-406)||(41386867-41386904)
chr7 (474-531)||(48290504-48290561)
chr7 (464-516)||(16079458-16079510)
chr7 (468-516)||(20088929-20088977)
chr7 (294-338)||(38123768-38123811)
chr7 (373-497)||(41792360-41792484)
[»] chr1 (32 HSPs)
chr1 (293-426)||(30220242-30220375)
chr1 (415-537)||(40642939-40643061)
chr1 (369-531)||(3887376-3887538)
chr1 (293-406)||(47978467-47978579)
chr1 (365-529)||(15514998-15515163)
chr1 (466-531)||(4347035-4347100)
chr1 (466-520)||(29759712-29759766)
chr1 (468-530)||(45557397-45557458)
chr1 (310-374)||(47836658-47836721)
chr1 (466-530)||(47981796-47981860)
chr1 (468-531)||(13344836-13344899)
chr1 (293-360)||(35198916-35198983)
chr1 (318-384)||(35215431-35215498)
chr1 (449-516)||(47978376-47978443)
chr1 (466-531)||(40352452-40352517)
chr1 (297-426)||(41521726-41521855)
chr1 (470-537)||(4192572-4192639)
chr1 (371-406)||(28083940-28083975)
chr1 (465-528)||(29988397-29988460)
chr1 (466-537)||(45660527-45660597)
chr1 (306-348)||(8318506-8318548)
chr1 (466-516)||(25061287-25061337)
chr1 (332-378)||(26605057-26605103)
chr1 (368-426)||(41178823-41178881)
chr1 (569-638)||(4276580-4276649)
chr1 (476-521)||(5268322-5268367)
chr1 (466-519)||(34875028-34875081)
chr1 (569-614)||(37593614-37593659)
chr1 (318-406)||(6021749-6021837)
chr1 (312-372)||(13990779-13990839)
chr1 (570-614)||(35017677-35017721)
chr1 (474-530)||(35961469-35961525)
[»] scaffold0172 (1 HSPs)
scaffold0172 (466-531)||(15256-15321)
[»] scaffold0009 (2 HSPs)
scaffold0009 (359-516)||(207004-207163)
scaffold0009 (468-516)||(199383-199431)
[»] scaffold0015 (1 HSPs)
scaffold0015 (466-531)||(65537-65602)
[»] scaffold0199 (1 HSPs)
scaffold0199 (569-634)||(6885-6950)


Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Complemental strand, 29779504 - 29778844
Alignment:
Q  8 tgagatgaagcactaaactgatcttggaagttgctaaataaaccattgccggataaaactggcttctgctgttaaatgcatgatatgtaatagccaaagt 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29779504 tgagaagaagcactaaactgatcttggaagttgctaaataaaccattgccggataaaactggcttctgctgttaaatgcatgatatgtaatagccaaagt 29779405  T
Q  108 ggcaattaaactaagacccgcatatgtctgcaaccgcatcattttgctctacaaaaaaccacagaaaccatttgaatcaacctgtgaaaacccaattgca 207  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29779404 ggcaattaaactaagacctgcatacgtctgcaaccgcatcattttgctctacaaaaaaccacagaaaccatttgaatcaacctgtgaaaacccaattgca 29779305  T
Q  208 aaacaacccataacatacatttatgatgagagaaagtttagatagacttggcacatgtttagtttcgattttggagggtagaaactcaaaagtgattcta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29779304 aaacaacccataacatacatttatgatgagagaaagtttagatagacttggcatatgtttagtttcgattttggagggtagaaactcaaaagtgattcta 29779205  T
Q  308 gagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29779204 gagattgtagaattgattttatcatgtttggatgatttaaaagagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttc 29779105  T
Q  408 acttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatcca 507  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29779104 acttctgcaattgattttaggcttaaagttattgtcgaatccacttttacacaaatacatccaaagataaatcactttatattcaactcacttttatcca 29779005  T
Q  508 taatcaattttacacaatcaattccctcaatcaaatttgcttacagcataaccaagcatacacttatttgagcttacatgctggcataaacacttgtgag 607  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29779004 taatcaattttacacaatcaattccctcaatcaaatttgcttatcgcataaccaagcatacacttatttgagcttacatgctggcataaacacttgtgag 29778905  T
Q  608 attgtttagaaaagcttatgacatgtcataagctcttcaagcttattttcataagctcttc 668  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  29778904 attgtttagaaaagcttatgacatgtcataagctttttaagcttattttcataagctcttc 29778844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 293 - 521
Target Start/End: Original strand, 11302316 - 11302543
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||   ||| | | |||||||||| |||||||||||||||||||| ||    
T  11302316 tcaaaattgattctagaagttgtagaattgattt-atcatgtttggatgatttaatgaagatttggttttgcttgtggaattgattctacttgaagctag 11302414  T
Q  393 aattt--gtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatatt 490  Q
    |||||  |||||||||  ||||| || ||||||||||  ||||| |||| ||| ||| |||||||||||| ||||||||||  | |||||| |||| |||    
T  11302415 aatttttgtagcttttggcttctacacttgattttagcattaaatttatcgtcaaattcacttttacacaaatacatccaa--acaaatcattttacatt 11302512  T
Q  491 caactcacttttatccataatcaattttaca 521  Q
    || ||||||||||| ||||||||||||||||    
T  11302513 catctcacttttattcataatcaattttaca 11302543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 293 - 530
Target Start/End: Complemental strand, 17898293 - 17898057
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||  | ||| ||||||||||||||||||||||||||||||||| |     
T  17898293 tcaaaattgattctagaggttgtagaattgattgtatcatgtttggatggtttaaagtataattgattttgcttgtagaattgattctacttgaagcaac 17898194  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
    ||| | ||| ||||  ||||| |||||||| || | |||  | |||||||  ||| |||||||||  | ||| ||||||| ||||||||||||| |||||    
T  17898193 aatatatagtttttggcttctacaattgatctttgccttggaattattgttcaattcacttttacctaaatatatccaaacataaatcactttacattca 17898094  T
Q  493 actcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||||| |  || |||||||| |||| ||||||||    
T  17898093 actcactttca-gcagaatcaattatacaaaatcaatt 17898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 314 - 519
Target Start/End: Complemental strand, 32817602 - 32817396
Alignment:
Q  314 gtagaattgattttatcatgtttgg-atgatttaaaag-agaatc---gattttgcttgtagaattgattctacttgaagccagaatttgtagcttttca 408  Q
    ||||||||||||||||||||||||| ||||||||||   |||||    ||||||| |||||||||||||||||||||| || |||||||||||||||| |    
T  32817602 gtagaattgattttatcatgtttgggatgatttaaactcagaatatttgattttgtttgtagaattgattctacttgaggctagaatttgtagcttttta 32817503  T
Q  409 cttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccat 508  Q
    ||||| ||||||||||||| |||||  || |||   |||||||||||||||| ||||||||||| ||||||||||||| |||||| | ||| ||||| |     
T  32817502 cttctacaattgattttagccttaa--tttttg--aaatccacttttacacaaatacatccaaacataaatcactttacattcaatttactcttatctag 32817407  T
Q  509 aatcaatttta 519  Q
    ||||| |||||    
T  32817406 aatcagtttta 32817396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 293 - 486
Target Start/End: Complemental strand, 47514371 - 47514178
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||| || || || ||||||||||||||| |||||| |||||||||||  ||||| |||||| ||||||||||||||| |||||||||  |     
T  47514371 tcaaaagtgattatataggttttagaattgattttatgatgtttagatgatttaaagtagaattgatttttcttgtagaattgattttacttgaagttac 47514272  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcacttta 486  Q
    ||||| ||||||||  ||||| ||||  ||| ||| |||||| |||||||  |||||||||||| | | | ||||||||| ||| |||||||||    
T  47514271 aatttatagcttttgccttctacaatgaattctagccttaaatttattgttaaatccacttttatagaaaaacatccaaacatagatcacttta 47514178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 531
Target Start/End: Complemental strand, 46508154 - 46507964
Alignment:
Q  339 atgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagtta 438  Q
    |||||||||| |||||| | ||||| ||||| ||||||||||| |||||||  |||||||| | ||||  ||||| |||| ||||||||||| ||| |||    
T  46508154 atgatttaaaggagaattggttttgtttgtaaaattgattctatttgaagctcgaatttgttgattttggcttctacaat-gattttagtct-aaattta 46508057  T
Q  439 ttgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||  || ||||||||  ||| | || | |||| |||||||||||||||||| ||||||||||||  | ||||||||||||| |||| ||||    
T  46508056 ttgttaaacccacttttttacaaacacgttcaaacataaatcactttatattccactcacttttatttagaatcaattttacaaaatctattc 46507964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 38716788 - 38716879
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctactt 384  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||  |||||  |||||||||| | ||||||||||||||    
T  38716788 tcaaaagtgattctagagattgtaaaattgattttatcaagtttgaatgatttaaagcagaatttattttgcttgcataattgattctactt 38716879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 391 - 497
Target Start/End: Original strand, 7206300 - 7206406
Alignment:
Q  391 agaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatatt 490  Q
    ||||||||||||||||  ||||| ||||||||||||| |||||| |||||||  |||| | ||||||| | ||||||||||| ||||||||||||| |||    
T  7206300 agaatttgtagcttttggcttctacaattgattttagccttaaatttattgttaaatctagttttacataaatacatccaaatataaatcactttacatt 7206399  T
Q  491 caactca 497  Q
    || ||||    
T  7206400 catctca 7206406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 262 - 505
Target Start/End: Original strand, 46382668 - 46382904
Alignment:
Q  262 atgtttagtttcgattttggagggtagaaactcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattt 361  Q
    |||||||||||| ||||||||||||       ||||| |||||| |||| |||||||||||| | |||||| ||| || |||||||| || ||| |||||    
T  46382668 atgtttagtttcaattttggagggt-------caaaattgattcaagaggttgtagaattgagtatatcat-tttagaggatttaaaggataattgattt 46382759  T
Q  362 tgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccactttt-acaca 460  Q
    || ||||| |||||||||||| || |   ||||||||| | ||||  ||||| | ||| |||||||| ||||| |||||||  ||| ||||||| |||      
T  46382760 tgtttgtaaaattgattctacatggatttagaatttgttgtttttggcttctacgattaattttagttttaaatttattgtaaaattcacttttaacatt 46382859  T
Q  461 gatacatccaaagataaatcactttatattcaactcacttttatc 505  Q
     ||||||| ||| |||||||| |||| |||||||| |||||||||    
T  46382860 tatacatctaaacataaatcattttacattcaacttacttttatc 46382904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 501
Target Start/End: Complemental strand, 8849689 - 8849484
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||| ||| |||||| |||||||| ||||| ||||||| |||||||  ||||   |||||  |||||||||| || |||||| |||| ||    
T  8849689 tcaaaagtgattctggaggttgtaggattgatttcatcatttttggataatttaaataagaaattattttagttgtagaattaatcctactt-aagctag 8849591  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
    ||||| ||||||||  ||||  |||||||||||   |||||| |||||||  |||||| ||||||| | ||| ||| ||| ||||| ||||||| |||||    
T  8849590 aatttatagcttttggcttccacaattgattttgcccttaaatttattgttaaatccatttttacataaata-atctaaacataaa-cactttacattca 8849493  T
Q  493 actcacttt 501  Q
    |||| ||||    
T  8849492 actcccttt 8849484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 537
Target Start/End: Original strand, 22250204 - 22250390
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagt-cttaaagttattgtcgaatcc 449  Q
    ||||| |||||||| | ||| |||| ||||||||||||| |||| ||| ||||||| | ||||| ||||| ||||| | || ||| |||||||   || |    
T  22250204 agaattgattttgcatctaggattggttctacttgaagcaagaaattgaagcttttga-ttctgaaattgcttttaatactcaaatttattgttcgattc 22250302  T
Q  450 acttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||   ||  |||||||  |||||||||| | ||||||||| ||||||  |||||||||||||||| |||||||||||||||    
T  22250303 acttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaa 22250390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 38740366 - 38740301
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| ||||||||||| |  ||||||||||||||||||| ||||||||||||| |||||||||    
T  38740366 atccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattc 38740301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 47733643 - 47733543
Alignment:
Q  416 aattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaat 515  Q
    |||||||||||| |||||| ||||| |  |||| | ||||||| | ||||||| ||| ||| |||| |||| |||||||| |||||||||||||||||||    
T  47733643 aattgattttagccttaaatttattattaaatctaattttacataaatacatcaaaatatatatcattttacattcaactaacttttatccataatcaat 47733544  T
Q  516 t 516  Q
    |    
T  47733543 t 47733543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 531
Target Start/End: Original strand, 48575408 - 48575542
Alignment:
Q  396 ttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaact 495  Q
    ||||||||||| |||||| |||||||||||| | | ||| |||||||  ||| || ||||||| | | | || |||| ||||| || |||| ||||||||    
T  48575408 ttgtagcttttaacttctacaattgattttaatttaaaatttattgttaaattcagttttacaaa-acatattcaaaaataaaccattttacattcaact 48575506  T
Q  496 cacttttatccataatcaattttacacaatcaattc 531  Q
    || ||||||| | ||||||||||||| |||||||||    
T  48575507 catttttatcaaaaatcaattttacaaaatcaattc 48575542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 2256556 - 2256496
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagaga 353  Q
    ||||||| |||| || || |||||||||||||||||||||||||  |||||||||||||||    
T  2256556 tcaaaagcgattttaaaggttgtagaattgattttatcatgtttaaatgatttaaaagaga 2256496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 466 - 517
Target Start/End: Complemental strand, 29468625 - 29468574
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattt 517  Q
    ||||||| ||||||||||||| |||||||||| ||||| |||||||||||||    
T  29468625 atccaaatataaatcactttacattcaactcatttttagccataatcaattt 29468574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 633 - 668
Target Start/End: Complemental strand, 29778856 - 29778821
Alignment:
Q  633 tcataagctcttcaagcttattttcataagctcttc 668  Q
    ||||||||||||||||||||||||||||||||||||    
T  29778856 tcataagctcttcaagcttattttcataagctcttc 29778821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 397
Target Start/End: Original strand, 50500234 - 50500317
Alignment:
Q  314 gtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaattt 397  Q
    |||||||||||||||| | |||| ||||||||| | |||||| ||||||||| |||||| | |||||| ||||||  |||||||    
T  50500234 gtagaattgattttattaggttttgatgatttatatgagaattgattttgctcgtagaactaattctaattgaagttagaattt 50500317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 539
Target Start/End: Complemental strand, 27096607 - 27096517
Alignment:
Q  449 cacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaatc 539  Q
    |||||||||| | ||| || |||| ||||||||| ||| ||||||| | ||| || |||||||||||||||||||||| || | |||||||    
T  27096607 cacttttacataaatatattcaaacataaatcaccttacattcaacgcgcttctagccataatcaattttacacaatccatccactcaatc 27096517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 32818477 - 32818422
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||| |||||||| |  ||||||||||||| ||||||| ||||||||||||||||    
T  32818477 agaattgattttgcctccagaattgattctatttgaagctagaatttgtagctttt 32818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 516
Target Start/End: Complemental strand, 22694653 - 22694611
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||    
T  22694653 ataaatcactttatgttcaactcacttttaaccaaaatcaatt 22694611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 22699764 - 22699814
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||| ||||||||    
T  22699764 atccaaacataaatcactttacattcaacttacttttaaccaaaatcaatt 22699814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 22980766 - 22980716
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||| ||||||||    
T  22980766 atccaaacataaatcactttacattcaacttacttttaaccaaaatcaatt 22980716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 22994353 - 22994303
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||| ||||||||    
T  22994353 atccaaacataaatcactttacattcaacttacttttaaccaaaatcaatt 22994303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 33843804 - 33843854
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| || ||||||||||||| ||| ||||||||    
T  33843804 atccaaacataaatcactttacatccaactcacttttagccagaatcaatt 33843854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 36150626 - 36150676
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| ||||||||||||||||  || ||||||||    
T  36150626 atccaaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 449 - 531
Target Start/End: Original strand, 43868212 - 43868294
Alignment:
Q  449 cacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||||| | ||  ||||||||| |||||||||||  ||||||| ||||||| | | ||| ||||||||| |||||||||    
T  43868212 cacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattc 43868294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 50024322 - 50024209
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaa 417  Q
    ||||||||||||| ||||||||||||  |||||| ||| ||||||| ||||| | |||||| ||  |||| | | ||||||||| |||| |||||| ||     
T  50024322 aattgattttatcgtgtttggatgatcaaaaagacaattgattttgtttgtaaagttgatttta--tgaa-caaaaatttgtagtttttgacttctacag 50024226  T
Q  418 ttgattttagtcttaaa 434  Q
    || |||||||| |||||    
T  50024225 tttattttagttttaaa 50024209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 50031440 - 50031327
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaa 417  Q
    ||||||||||||| ||||||||||||  |||||| ||| ||||||| ||||| | |||||| ||  |||| | | ||||||||| |||| |||||| ||     
T  50031440 aattgattttatcgtgtttggatgatcaaaaagacaattgattttgtttgtaaagttgatttta--tgaa-caaaaatttgtagtttttgacttctacag 50031344  T
Q  418 ttgattttagtcttaaa 434  Q
    || |||||||| |||||    
T  50031343 tttattttagttttaaa 50031327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 50945469 - 50945396
Alignment:
Q  464 acatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||| ||| ||||||||||||| ||| ||||||  |||||||  ||||||||||| | ||||||||| |||||    
T  50945469 acatcaaaacataaatcactttacatttaactcaaatttatccggaatcaattttataaaatcaattcactcaa 50945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 6099910 - 6099818
Alignment:
Q  295 aaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaa 387  Q
    |||||||||| || || ||||| ||||||||||||| | |||| |||||||||||| |||   |||||| ||| | |||| ||| ||||||||    
T  6099910 aaaagtgattttaaaggttgtaaaattgattttatcttttttgaatgatttaaaagtgaaataattttgtttgcataattcattatacttgaa 6099818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 28947811 - 28947763
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| |||||||||||||  ||||||||||||||| ||| ||||||||    
T  28947811 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 28947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 36639888 - 36639951
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| |||||||||||||| ||||||||| ||| |  |||||||| ||||||| ||||||||    
T  36639888 atccaaacataaatcactttatcttcaactca-tttaagtcataatcagttttacaaaatcaatt 36639951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 48045741 - 48045693
Alignment:
Q  469 caaagataaatcactttatattcaactcacttttatccataatcaattt 517  Q
    |||| |||||||||||||| ||||||||| ||||| ||| |||||||||    
T  48045741 caaacataaatcactttatcttcaactcagttttagccagaatcaattt 48045693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 632
Target Start/End: Original strand, 51555723 - 51555763
Alignment:
Q  592 cataaacacttgtgagattgtttagaaaagcttatgacatg 632  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  51555723 cataagcacttatgagattgtttagaagagcttatgacatg 51555763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 53796517 - 53796453
Alignment:
Q  364 cttgtagaattgattctacttgaagccagaatttgta-gcttttcacttctgcaattgattttag 427  Q
    ||||||||||||||| || | ||||| |||||||||| | |||| |||||| |||||||||||||    
T  53796517 cttgtagaattgattatagtagaagctagaatttgtaggtttttgacttctacaattgattttag 53796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 295 - 537
Target Start/End: Original strand, 36306890 - 36307129
Alignment:
Q  295 aaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaa 394  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||| |   |||| ||||||| ||||| ||||||||||||||| ||| | ||    
T  36306890 aaaagtgattctagagattgtggaattgattttacgatgtttggatgatttata---gaattgattttgattgtacaattgattctacttggagctacaa 36306986  T
Q  395 tttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaac 494  Q
    ||| ||||||||  ||||| ||||||||||||| |||||| |||||||  |||||||||||| | | |||||| |||| || ||| ||||||  ||||||    
T  36306987 tttatagcttttgtcttctacaattgattttagccttaaatttattgttaaatccacttttatataaatacatacaaacatcaattactttacgttcaac 36307086  T
Q  495 tcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  36307087 tcacttttatccataatcaattttacataatcaattcactcaa 36307129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 294 - 529
Target Start/End: Complemental strand, 4007365 - 4007132
Alignment:
Q  294 caaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccaga 393  Q
    ||||| ||||||||||  ||||||||||||||| ||  |||||| | ||||||||  |||||  |||||||   ||||||||||||||||| |||  | |    
T  4007365 caaaaatgattctagatgttgtagaattgattt-atgttgtttgaaagatttaaagtagaattcattttgcccttagaattgattctactttaagttaca 4007267  T
Q  394 atttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaa 493  Q
    |||||||| ||||  ||||||||||||||||||| |||||| | ||||   |||||||||||||| | ||||||| ||| |||||| |||||  ||||||    
T  4007266 atttgtagtttttgccttctgcaattgattttagccttaaattcattgataaatccacttttacataaatacatc-aaacataaattacttttcattcaa 4007168  T
Q  494 ctcacttttatccataatcaattttacacaatcaat 529  Q
    |||||||||||||||||||||||||||| |||||||    
T  4007167 ctcacttttatccataatcaattttacaaaatcaat 4007132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 42650192 - 42650330
Alignment:
Q  294 caaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccaga 393  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||| ||||| | |||||| |||||||||||||||||  | |    
T  42650192 caaaagtgattctagagattgtagaattgattttatgatgtttggatgatttaaagtataattgatttcgtttgtaggattgattctacttgaagttata 42650291  T
Q  394 atttgtagcttttcacttctgcaattgattttagtctta 432  Q
    |||||||||||||  ||||| ||||||||||||| ||||    
T  42650292 atttgtagcttttgtcttctccaattgattttagcctta 42650330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 392 - 516
Target Start/End: Original strand, 10918575 - 10918699
Alignment:
Q  392 gaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattc 491  Q
    |||||||||||||||  ||||| ||| || |||||| |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  10918575 gaatttgtagcttttggcttctacaaatggttttagccttaaatttattgtcaaatccacttttacacaaatacatccaaacataaatcactttacattc 10918674  T
Q  492 aactcacttttatccataatcaatt 516  Q
    |||||||||||||||| ||||||||    
T  10918675 aactcacttttatccaaaatcaatt 10918699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 425
Target Start/End: Original strand, 43987860 - 43987985
Alignment:
Q  300 tgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgt 399  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||| ||||||||||||| |  |||| ||| |||||    
T  43987860 tgattctagaagttgtagaattgattttatcatgtttggatgatttaaaagataattgattttctttgcagaattgattctaatgaaagctagagtttgt 43987959  T
Q  400 agcttttcacttctgcaattgatttt 425  Q
    |||||||  ||||| || ||||||||    
T  43987960 agcttttggcttctacacttgatttt 43987985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 12110920 - 12110985
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  12110920 atccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattc 12110985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 367 - 486
Target Start/End: Original strand, 43717318 - 43717438
Alignment:
Q  367 gtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatcca-cttttacacagatac 465  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||| | |||||||||||||  || || |||||||  ||| ||  ||||||||| |||     
T  43717318 gtagaattgattctacttgaagctagaatttgtagcttcttgcttttacaattgattttagcattgaatttattgttcaattcattttttacacaaatat 43717417  T
Q  466 atccaaagataaatcacttta 486  Q
    ||||||| |||||||||||||    
T  43717418 atccaaacataaatcacttta 43717438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 21234616 - 21234529
Alignment:
Q  367 gtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttt 454  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||| | || ||||||  |||||||| |||| |||||    
T  21234616 gtagaattgattctacttgaagctagaatttgtagcttttggcttctacaattgactgtaatcttaattttattgtcaaatcgacttt 21234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 32631201 - 32631149
Alignment:
Q  296 aaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaa 348  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||    
T  32631201 aaagtgattcttgagattgtagaattgattttaccatgtttagatgatttaaa 32631149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 3551555 - 3551645
Alignment:
Q  296 aaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaa 387  Q
    ||||||||||||||  || || |||||||||||| ||||||||||||||||||  ||| | || ||| ||||||||||| ||||||||||||    
T  3551555 aaagtgattctagaagttataaaattgattttatgatgtttggatgatttaaagtagatttga-tttacttgtagaatttattctacttgaa 3551645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 1763274 - 1763330
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||||||||| |||||||||| ||||| ||| ||||||||||||| ||||||||    
T  1763274 ataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaatt 1763330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 43969660 - 43969732
Alignment:
Q  334 tttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||| ||| ||| ||||||  |||||||||||| | ||||||||||||||| | ||||||||||||||||    
T  43969660 tttggatcattgaaaggagaattaattttgcttgtatatttgattctacttgaaactagaatttgtagctttt 43969732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 17140660 - 17140723
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||| | |||| |||| |||||    
T  17140660 ataaatcactttacattcaattcacttttatccaaaatcaattttatagaatctattcactcaa 17140723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 42871370 - 42871510
Alignment:
Q  295 aaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaa 394  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||| ||||||    |||   ||||| ||| || |||||||||||||| |||| ||||    
T  42871370 aaaagtggtgctagaggttgtagaattgattttatcatgttttgataatttaa---ggaa---atttt-cttttataattgattctactttaagctagaa 42871462  T
Q  395 tttgtagcttttcacttctgcaattgattttagtcttaaagttattgt 442  Q
    |||  |  |||| | |||| ||||||||||| |||||||| |||||||    
T  42871463 tttagaattttttatttctacaattgattttggtcttaaatttattgt 42871510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 15220853 - 15220791
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaa 528  Q
    ||||||| ||||||||||||| |||||||||||||||   |||||||||| ||||| ||||||    
T  15220853 atccaaacataaatcactttacattcaactcacttttcgtcataatcaatattacaaaatcaa 15220791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 23359992 - 23359942
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||    
T  23359992 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 23359942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 635
Target Start/End: Complemental strand, 40667527 - 40667481
Alignment:
Q  589 tggcataaacacttgtgagattgtttagaaaagcttatgacatgtca 635  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  40667527 tggcataagcacttgtgagattgtttggaagagcttatgacatgtca 40667481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 14716526 - 14716587
Alignment:
Q  322 gattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaag 388  Q
    |||||||||||  ||||||||||||||   ||| |||||||| ||||||||||||||||||||||||    
T  14716526 gattttatcat--ttggatgatttaaa---gaaccgattttgtttgtagaattgattctacttgaag 14716587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 31785743 - 31785823
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaat 373  Q
    |||||| |||||||| || ||||||| || |||| ||||| |||||||||||||   |||| | |||||||||||||||||    
T  31785743 tcaaaattgattctaaaggttgtagatttaatttgatcatatttggatgatttattggagatttgattttgcttgtagaat 31785823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 36706437 - 36706382
Alignment:
Q  351 agaatcgattttgcttgtagaattgattcta-cttgaagccagaatttgtagcttt 405  Q
    ||||| |||||||||| |||||||||||||| ||||| || |||||||||||||||    
T  36706437 agaattgattttgcttttagaattgattctagcttgatgctagaatttgtagcttt 36706382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 42650356 - 42650419
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||||||||| |||||||| | |||| |||| |||||| |||||| ||||||||| |||||    
T  42650356 ataaatcactttacattcaacttagttttgtccacaatcaaatttacataatcaattcactcaa 42650419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 21234516 - 21234446
Alignment:
Q  409 cttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaat 479  Q
    ||||| ||||||||||||  |||||  |||||||| |||||||||| ||| | ||||||||||| ||||||    
T  21234516 cttctacaattgattttaaccttaagtttattgtcaaatccactttcacataaatacatccaaacataaat 21234446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 521
Target Start/End: Complemental strand, 36937277 - 36937147
Alignment:
Q  391 agaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatatt 490  Q
    |||| |||||| |||| |||||| ||||||||||||| ||| || |||||||  |||  ||||||||  | ||| || |||| ||||| || ||||  ||    
T  36937277 agaaattgtagattttgacttctacaattgattttagccttgaatttattgttcaatatacttttacttaaatatatacaaatataaaccattttacgtt 36937178  T
Q  491 caactcacttttatccataatcaattttaca 521  Q
     |||||||||||||||  |||||||| ||||    
T  36937177 aaactcacttttatccggaatcaattataca 36937147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 17797389 - 17797470
Alignment:
Q  325 tttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    |||| |||||||| ||||||||||||||| | |  |||||||||||||||| || || ||||| | | ||||||||| ||||    
T  17797389 tttaacatgtttgaatgatttaaaagagatttgggtttgcttgtagaattggttttatttgaaactataatttgtagttttt 17797470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 30503149 - 30503242
Alignment:
Q  313 tgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||||| || |||||| |  |||||| ||  ||||  |||||||| |  | |||||||||||||||||||||| ||| |||||||||    
T  30503149 tgtagaattgattctaacatgttcgattgatttcaagaagaaatgattttgcctccaaaattgattctacttgaagccaggattcgtagctttt 30503242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 434
Target Start/End: Original strand, 37047178 - 37047302
Alignment:
Q  309 agattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttca 408  Q
    ||||| |||||||||||||||||| |||||| || ||  |  ||||| ||||||| | |||||||||||| ||||| || | | |||||||| ||||| |    
T  37047178 agattatagaattgattttatcatatttggaagacttcgataagaattgattttgatcgtagaattgattttactt-aaactaaaatttgtatcttttga 37047276  T
Q  409 cttctgcaattgattttagtcttaaa 434  Q
    ||||  || || ||||| ||||||||    
T  37047277 cttcaacacttaatttttgtcttaaa 37047302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 537
Target Start/End: Original strand, 3853946 - 3854018
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttta-cacaatcaattccctcaa 537  Q
    ||||||| |||||||| |||| ||||||||||||||||  || |||||||| || || |||||||||| ||||    
T  3853946 atccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaattccatcaa 3854018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 6767777 - 6767829
Alignment:
Q  475 taaatcactttatattcaactcacttttatccataatcaattttacacaatca 527  Q
    |||||||||||| |||||||||| |||||  || ||||||||||||| |||||    
T  6767777 taaatcactttacattcaactcatttttaatcacaatcaattttacaaaatca 6767829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 11759828 - 11759780
Alignment:
Q  489 ttcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||||||||  || ||||||||||||| ||||||||| |||||    
T  11759828 ttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaa 11759780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 293 - 537
Target Start/End: Original strand, 32111914 - 32112158
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||| ||| || || ||||||||||||  || ||||||||||||||  | ||| |||||||  |||||||||||||||||||||||| |     
T  32111914 tcaaaagtgattcttgaggttctaaaattgattttatgttggttggatgatttaaagtaaaattgattttgtatgtagaattgattctacttgaagctac 32112013  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
    ||||||||||||||  ||| |  |||||||||||| |||||| | |||||  |||||||||||||| | ||| ||||||| |||||| |||||  |||||    
T  32112014 aatttgtagcttttggcttttagaattgattttagacttaaattcattgttaaatccacttttacataaataaatccaaacataaattacttttcattca 32112113  T
Q  493 actcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  32112114 actcatttttatccataatcaattttacataatcaattcactcaa 32112158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 293 - 434
Target Start/End: Complemental strand, 49829221 - 49829080
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||||||| ||||  |||||||| ||| ||||||||||||||||||  |||||| |||||||||||| ||||||||||||||||||| |     
T  49829221 tcaaaagtgattctagaggttgtttaattgattatatgatgtttggatgatttaaagtagaatcaattttgcttgtacaattgattctacttgaagctac 49829122  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaa 434  Q
    ||||||||| | ||  ||||| |||||||||||| |||||||    
T  49829121 aatttgtagttcttagcttctacaattgattttactcttaaa 49829080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 315 - 531
Target Start/End: Complemental strand, 41115505 - 41115289
Alignment:
Q  315 tagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctg 414  Q
    ||||| |||||||  |||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||     
T  41115505 tagaactgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttggcttcta 41115406  T
Q  415 caattgattttagtcttaaagttattg-tcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatca 513  Q
    ||||||||||||  |||  | ||| || || ||||   ||||||| ||| | ||||||| ||||| || |||| |||||||||| | ||| ||| |||||    
T  41115405 caattgattttaacctt-gatttactgttcaaatcactttttacatagacatatccaaacataaaccattttacattcaactcattgttagccaaaatca 41115307  T
Q  514 attttacacaatcaattc 531  Q
    ||| |||| |||||||||    
T  41115306 attatacaaaatcaattc 41115289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 367 - 531
Target Start/End: Original strand, 40339220 - 40339384
Alignment:
Q  367 gtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagataca 466  Q
    ||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||| ||| || |||||||  ||| |||||||||  | ||| |    
T  40339220 gtagaattgattctacttgaagctacaatttgtagctttttgcttctacaattgattttagccttgaatttattgttcaattcacttttacctaaatata 40339319  T
Q  467 tccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||| ||||| ||||||| ||||| ||| |||||   || |||||||| |||| ||| |||||    
T  40339320 tccaaacataaaccactttacattcagctctctttttgacagaatcaattatacaaaattaattc 40339384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 293 - 531
Target Start/End: Complemental strand, 25129686 - 25129466
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||                  |  ||||||||||||||| ||   |     
T  25129686 tcaaaattgattctagaggttgtagaattgattttatcatgtttggatgatttaaa------------------ggtgaattgattctacttaaacatat 25129605  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
    | ||||||  ||||  |||||  |||||||||||| ||  || |||||||  |||||||||||||| | ||||||||||| ||||||||| ||| |||||    
T  25129604 agtttgtaatttttggcttctataattgattttagcctccaatttattgttaaatccacttttacataaatacatccaaacataaatcacgttacattca 25129505  T
Q  493 actcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||||||||||  |||||||||||||  ||||||||    
T  25129504 actcacttttatcctgaatcaattttacaacatcaattc 25129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 519
Target Start/End: Original strand, 51167850 - 51168011
Alignment:
Q  357 gattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccactttta 456  Q
    ||||||| || || ||||||||||| || |||| | |||||| ||||||| |||||| ||||||||||||| |||| | ||||||   ||||| ||||||    
T  51167850 gattttgtttttataattgattctagtttaagctacaatttgcagcttttgacttctacaattgattttagccttacatttattgcgaaatccgctttta 51167949  T
Q  457 cacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaatttta 519  Q
    || | |||| |||||| |||||||| |||| | |||||||| ||||| | || ||||||||||    
T  51167950 cataaatac-tccaaacataaatcattttaaaatcaactcaattttaacgatgatcaatttta 51168011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 46870338 - 46870407
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgatttt 362  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| || ||| ||||||    
T  46870338 tcaaaagtgattatagatgttgtagaattgattttatcatgtttggatgatttaaaggataattgatttt 46870407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 519
Target Start/End: Original strand, 51151566 - 51151691
Alignment:
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
    |||||| ||||||| |||||| ||||||||||||| |||| | ||||||   ||||| |||||||| | |||| |||||| |||||||| |||| | |||    
T  51151566 aatttgcagcttttgacttctacaattgattttagccttacatttattgcgaaatccgcttttacataaatac-tccaaacataaatcattttaaaatca 51151664  T
Q  493 actcacttttatccataatcaatttta 519  Q
    ||||| ||||| | |||||||||||||    
T  51151665 actcaattttaacgataatcaatttta 51151691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 31766239 - 31766174
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| |||||||||||||  ||||||||||||||||||| ||| ||||||||| |||||||||    
T  31766239 atccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattc 31766174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 835854 - 835926
Alignment:
Q  334 tttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||||||| |||||| ||||||  |||||||||||||||||  ||| || ||||||||||||||||    
T  835854 tttggatgatttaaaggagaattgattttcgttgtagaattgattctagctgatgctagaatttgtagctttt 835926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 7742280 - 7742189
Alignment:
Q  321 tgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttc 412  Q
    |||||||||||||||||||| |||||||  ||||| |||||||  | || |||| ||| |||||||| | | |||||||||||||| |||||    
T  7742280 tgattttatcatgtttggataatttaaagaagaattgattttgtctatataattaattttacttgaaactaaaatttgtagcttttgacttc 7742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 7012677 - 7012727
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||    
T  7012677 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 7012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 44489499 - 44489381
Alignment:
Q  376 attctacttgaagccagaattt-gtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaaga 474  Q
    |||||||||||||| ||||||| |||||||||   |||| ||||||||||||||||| || | |||||  ||| |||||||||  | ||| ||||||| |    
T  44489499 attctacttgaagcaagaattttgtagcttttggtttctacaattgattttagtcttgaattcattgttcaattcacttttacctaaatatatccaaaca 44489400  T
Q  475 taaatcactttatattcaa 493  Q
    |||| |||| || ||||||    
T  44489399 taaaccactctacattcaa 44489381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 10852775 - 10852727
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| ||||||||||||| |||||||||||||||| ||| ||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 10852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 531
Target Start/End: Original strand, 30958099 - 30958195
Alignment:
Q  436 ttattgtcgaatccacttttacacagatacatccaaagataaatca-ctttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||  ||| ||||||||||   ||| ||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  30958099 ttattgttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattc 30958195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 531
Target Start/End: Original strand, 30973911 - 30974007
Alignment:
Q  436 ttattgtcgaatccacttttacacagatacatccaaagataaatca-ctttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||  ||| ||||||||||   ||| ||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  30973911 ttattgttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattc 30974007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 42644299 - 42644351
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttt 518  Q
    ||||||| ||||||||||||| |||||||||||||||| | | ||||||||||    
T  42644299 atccaaacataaatcactttacattcaactcacttttaactaaaatcaatttt 42644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 44225602 - 44225666
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| ||||||||||||| ||| |||||||||||| | | |||||||| |||| ||||||||    
T  44225602 atccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaatt 44225666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 47101231 - 47101274
Alignment:
Q  326 ttatcatgtttggatgatttaaaagagaatcgattttgcttgta 369  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||    
T  47101231 ttatcatgtttagatgattaaaaagagaattgattttgcttgta 47101274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 1441389 - 1441327
Alignment:
Q  476 aaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaat 538  Q
    |||||||||||  |||||||||||||||  || ||||||||||||| ||| ||||| ||||||    
T  1441389 aaatcactttacgttcaactcacttttagacagaatcaattttacaaaattaattcactcaat 1441327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 10853331 - 10853281
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| |||||||| |||||||| |||||||||||| ||| ||||||||    
T  10853331 atccaaacataaatcaatttatattaaactcacttttaaccaaaatcaatt 10853281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 24916585 - 24916639
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaa 528  Q
    |||||||| |||| |||||||||||||||| ||  ||||||||||||| ||||||    
T  24916585 ataaatcattttacattcaactcacttttagcctgaatcaattttacaaaatcaa 24916639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 25579152 - 25579074
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtaga 371  Q
    |||||| |||||||||||  |||||||||| |||||||| ||||| || ||||||| || |||  ||||||||| ||||    
T  25579152 tcaaaattgattctagaggatgtagaattggttttatcaagtttgtattatttaaaggaaaatttattttgcttataga 25579074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 531
Target Start/End: Complemental strand, 32523327 - 32523261
Alignment:
Q  465 catccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||| | |||||||||||| ||||||| |||||||  || ||||||||||||  |||||||||    
T  32523327 catccaaacacaaatcactttatcttcaactaacttttaatcaaaatcaattttacctaatcaattc 32523261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 44958621 - 44958563
Alignment:
Q  479 tcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||||  ||||||||||||||| ||| |||||||||||||  |||||||| |||||    
T  44958621 tcactttactttcaactcacttttagccaaaatcaattttacatgatcaattcactcaa 44958563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 7717428 - 7717375
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctt 404  Q
    ||||| |||||||| |  ||||||||||||||||||||| |||| |||||||||    
T  7717428 agaattgattttgcctccagaattgattctacttgaagctagaaattgtagctt 7717375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 21023271 - 21023215
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||||||| | ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  21023271 ataaatcacttcaaattcaactcacatttaaccaaaatcaattttaca-aatcaattc 21023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 23918881 - 23918929
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| ||||||||||||| |||||||||||||||| ||| ||| ||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaaccaaaattaatt 23918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 32245343 - 32245263
Alignment:
Q  376 attctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccactttta 456  Q
    |||||||||||| | ||||||| ||  |||| | |||| |||||||||||||| ||||| ||||||   ||||||||||||    
T  32245343 attctacttgaaactagaatttctaattttttatttctacaattgattttagttttaaatttattgataaatccactttta 32245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 48089674 - 48089618
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    |||||||| |||| |||||||||||||||| | | ||||||||||| | ||||||||    
T  48089674 ataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaatt 48089618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 1471351 - 1471200
Alignment:
Q  14 gaagcactaaactgatcttggaagttgctaaataaaccattgccggataaaactggcttctgctgttaaatgcatgatatgtaatagccaaagtggcaat 113  Q
    ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| || ||    
T  1471351 gaagcaccaaactgatcttggaagttgaaagatacaccattgccggataaaactggcctctactgttaaatgcatgatatgcaatagccaaagttgccat 1471252  T
Q  114 taaactaagacccgcatatgtctgcaaccgcatcattttgctctacaaaaaa 165  Q
     ||||||||||| |||||||||| ||||| |||||| || ||||||| ||||    
T  1471251 caaactaagaccagcatatgtcttcaacctcatcatgttcctctacacaaaa 1471200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 332 - 503
Target Start/End: Complemental strand, 32422058 - 32421887
Alignment:
Q  332 tgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtctt 431  Q
    |||||||||||||||||  | |||  ||||| ||||||||||||||||| |||||||| | |||||||||| |||  ||||| ||||||||||||| |||    
T  32422058 tgtttggatgatttaaagtaaaattaattttacttgtagaattgattctccttgaagctacaatttgtagcatttggcttctacaattgattttagcctt 32421959  T
Q  432 aaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcactttta 503  Q
    ||| | ||||   ||| |||||||||| | ||||||||||| ||||||||||||  ||||||||||| ||||    
T  32421958 aaattcattgataaattcacttttacataaatacatccaaacataaatcacttttcattcaactcacattta 32421887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 1879089 - 1879207
Alignment:
Q  305 ctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctt 404  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||  | ||||||| | ||||| ||||||    
T  1879089 ctagagattgtagaattgattttatcatgtttggatgagttaaaagagaatttattttacttgtagaattgattacatttgaagctaaaatttatagctt 1879188  T
Q  405 ttcacttctgcaattgatt 423  Q
    || |||| | |||||||||    
T  1879189 ttaacttatacaattgatt 1879207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 357 - 516
Target Start/End: Complemental strand, 5970121 - 5969958
Alignment:
Q  357 gattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccactttta 456  Q
    ||||| ||||| ||||| ||||||||||||||  |||||||| |||||||  ||||| || |||||||||| |||||| |||| ||  |||||||| |||    
T  5970121 gatttagcttgcagaatggattctacttgaagttagaatttgcagcttttggcttctacagttgattttagccttaaatttatggttaaatccactatta 5970022  T
Q  457 cacagatacat----ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    |||| ||||||     |||| ||||||||||||| ||||||||||||| |||||| ||||||||    
T  5970021 cacaaatacatttaaacaaacataaatcactttacattcaactcacttatatccaaaatcaatt 5969958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 530
Target Start/End: Complemental strand, 5465615 - 5465398
Alignment:
Q  312 ttgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcactt 411  Q
    |||||||||||||||||| || ||||||||| |||||  | |||  ||||| | ||||||||| |||||||||||||| | ||||||||| ||||  |||    
T  5465615 ttgtagaattgattttatgatatttggatgaattaaagtataattaattttccctgtagaattaattctacttgaagctacaatttgtagtttttggctt 5465516  T
Q  412 ctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataat 511  Q
    || |  ||||  |||| |||||| | ||||   |||| | ||||||| | ||||||| ||| |||||||| |||  |||||| ||||||||||| | |||    
T  5465515 ctactgttga-attagccttaaattcattgataaatcaatttttacataaatacatctaaacataaatcatttttcattcaattcacttttatctaaaat 5465417  T
Q  512 caattttacacaatcaatt 530  Q
    |||||||||| ||||||||    
T  5465416 caattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 531
Target Start/End: Original strand, 23647622 - 23647782
Alignment:
Q  371 aattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatcca 470  Q
    ||||||||||||||||||| | |||||||  ||||| |||||| ||||||||| ||  |||||| |||| |   |||||||||||||  | |||||||||    
T  23647622 aattgattctacttgaagctacaatttgttacttttgacttctacaattgattataaccttaaatttatggctaaatccacttttacgtaaatacatcca 23647721  T
Q  471 aagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    || |||||||| |||| ||| ||  |||||| ||||| ||| ||||||||  |||||||||    
T  23647722 aacataaatcattttacatttaatccactttcatccaaaattaattttactgaatcaattc 23647782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 531
Target Start/End: Complemental strand, 23810951 - 23810791
Alignment:
Q  371 aattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatcca 470  Q
    ||||||||||||||||||| | |||||||  ||||| |||||| ||||||||| ||  |||||| |||| |   |||||||||||||  | |||||||||    
T  23810951 aattgattctacttgaagctacaatttgttacttttgacttctacaattgattataaccttaaatttatggctaaatccacttttacgtaaatacatcca 23810852  T
Q  471 aagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    || |||||||| |||| ||| ||  |||||| ||||| ||| ||||||||  |||||||||    
T  23810851 aacataaatcattttacatttaatccactttcatccaaaattaattttactgaatcaattc 23810791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 14299429 - 14299490
Alignment:
Q  476 aaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||    
T  14299429 aaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaa 14299490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 365 - 497
Target Start/End: Original strand, 41606243 - 41606375
Alignment:
Q  365 ttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagata 464  Q
    ||||| |||||||||||||| |||| ||||||| |||||||| | |||| ||||| ||||||  |||||| |||| |||   | |||||||||| | |||    
T  41606243 ttgtataattgattctactttaagctagaatttatagcttttgatttctacaattaattttaaccttaaatttatggtcaggttcacttttacataaata 41606342  T
Q  465 catccaaagataaatcactttatattcaactca 497  Q
     ||||||| | |||| |||||| ||||||||||    
T  41606343 aatccaaacacaaataactttacattcaactca 41606375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 13505132 - 13505041
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctactt 384  Q
    |||||||||||| ||||  ||| |||||| |||||| |||||||||| |||||||||| |||| | ||||| ||||| |||| |||||||||    
T  13505132 tcaaaagtgattatagaagttggagaattaattttaccatgtttggaagatttaaaagtgaattggttttgtttgtaaaattaattctactt 13505041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 19563903 - 19563756
Alignment:
Q  374 tgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaag 473  Q
    |||||||||| | ||| | ||||||||||||||    ||| ||||||||||| |||||||| | |||||  |||  ||||||| | | |||||| ||||     
T  19563903 tgattctactagtagctataatttgtagcttttggtctcttcaattgatttttgtcttaaattcattgttaaatatacttttatataaatacattcaaac 19563804  T
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttaca 521  Q
    |||||||| |||| ||||| |||| ||||||||| |||||||| ||||    
T  19563803 ataaatcattttacattcagctcatttttatccagaatcaattataca 19563756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 4150187 - 4150279
Alignment:
Q  295 aaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaa 387  Q
    |||||||||| |||| ||| || ||||||||||||| | |||  ||||| ||||||| ||| |||||||||| || |||| ||||||||||||    
T  4150187 aaaagtgattttagaaattataaaattgattttatcgtatttaaatgatataaaagataattgattttgcttataaaattcattctacttgaa 4150279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 519
Target Start/End: Complemental strand, 6095458 - 6095270
Alignment:
Q  331 atgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtct 430  Q
    |||||||| |||||| ||  ||||| ||||||| |||||||||| |||||||| ||||| |  |||||||| ||||  ||||| || || ||||||| |     
T  6095458 atgtttggttgatttgaagtagaattgattttgattgtagaatttattctactcgaagctacgatttgtagtttttggcttctacattttattttagcca 6095359  T
Q  431 taaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaatttta 519  Q
    |||| | |||||  ||| || ||||||| | ||| || |||| |||||||| |||  | |||||||| | ||||| | |||||||||||    
T  6095358 taaattcattgttaaattcatttttacataaatatattcaaacataaatcatttttcaatcaactcattattatctagaatcaatttta 6095270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 16919334 - 16919425
Alignment:
Q  312 ttgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttg-aagccagaatttgtagc 402  Q
    |||||||||||||||||| ||| |   ||||||| || ||||||  |||||| |||||||||| |||||||||| |||| ||||||||||||    
T  16919334 ttgtagaattgattttattatggtataatgatttgaaggagaattaattttgtttgtagaatttattctacttgaaagctagaatttgtagc 16919425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 22811077 - 22811127
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||    
T  22811077 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 22811127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 23647531 - 23647617
Alignment:
Q  263 tgtttagtttcgattttggagggt-agaaactcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaa 348  Q
    ||||| ||||| ||||| |||||| | ||||| |||| ||||| ||||| | |||||||||||||||| ||||||||||||| ||||    
T  23647531 tgtttggtttcaattttagagggtcaaaaactaaaaattgattgtagaggtcgtagaattgattttataatgtttggatgatgtaaa 23647617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 23811042 - 23810956
Alignment:
Q  263 tgtttagtttcgattttggagggt-agaaactcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaa 348  Q
    ||||| ||||| ||||| |||||| | ||||| |||| ||||| ||||| | |||||||||||||||| ||||||||||||| ||||    
T  23811042 tgtttggtttcaattttagagggtcaaaaactaaaaattgattgtagaggtcgtagaattgattttataatgtttggatgatgtaaa 23810956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 3233199 - 3233248
Alignment:
Q  323 attttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaa 372  Q
    ||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  3233199 attttatcatgtttgaaagatttaaaggagaattgattttgcttgtagaa 3233248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 7667605 - 7667662
Alignment:
Q  369 agaattgattcta-cttgaagccagaatttgtagcttttcacttctgcaattgatttt 425  Q
    ||||||||||||| |||||||| |||||||| ||||||| |||||||||||| |||||    
T  7667605 agaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttt 7667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 19784861 - 19784914
Alignment:
Q  463 tacatccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    |||||||||| ||||| ||||||| |||||||||||||||| ||| ||||||||    
T  19784861 tacatccaaacataaaccactttacattcaactcacttttaaccaaaatcaatt 19784914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 541
Target Start/End: Complemental strand, 117505 - 117413
Alignment:
Q  449 cacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaatcaa 541  Q
    |||||||||| ||||  ||||||| || ||||| ||||  |||||||||||| ||  || ||||||| ||||| ||||||||| |||||||||    
T  117505 cacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatcaattcactcaatcaa 117413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 621347 - 621291
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||||||||| |||||||| | ||||| ||| ||||||||||||| ||||||||    
T  621347 ataaatcactttaaattcaactgaattttaaccaaaatcaattttacaaaatcaatt 621291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 535
Target Start/End: Original strand, 6988162 - 6988282
Alignment:
Q  415 caattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaa 514  Q
    ||||||||||||  |||||| |||  ||  ||| |||||||| | | ||||||| ||| |||||||| |||| |||||||| |||||||   | ||||||    
T  6988162 caattgattttatccttaaaattaccgttaaattcacttttagataaatacatctaaacataaatcattttaaattcaacttacttttaattaaaatcaa 6988261  T
Q  515 ttttacacaatcaattccctc 535  Q
    ||||||| |||||||| ||||    
T  6988262 ttttacaaaatcaatttcctc 6988282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 521
Target Start/End: Original strand, 1105461 - 1105588
Alignment:
Q  394 atttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaa 493  Q
    ||||||||||||| ||||||  |||||||||||| ||| || ||| ||   || ||| ||||||||| ||  ||||||| |||||||| |||| ||||||    
T  1105461 atttgtagcttttgacttctataattgattttagccttgaaattaatgctcaacccatttttacacaaatgtatccaaatataaatcaatttacattcaa 1105560  T
Q  494 ctcacttttatccataatcaattttaca 521  Q
    |   |||||| | | |||||||||||||    
T  1105561 cctgcttttagctacaatcaattttaca 1105588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 531
Target Start/End: Complemental strand, 2868416 - 2868349
Alignment:
Q  464 acatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||||  |||||||||||| |||||||||||||||| | | |||||||| |||| ||| |||||    
T  2868416 acatccaaacttaaatcactttacattcaactcacttttaactaaaatcaattctacaaaattaattc 2868349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 3227948 - 3228046
Alignment:
Q  302 attctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtag 401  Q
    ||||||||||| ||||||||| ||||||  | || |||||||||||| |||||| ||| ||||||||| |||| ||| || ||||||   ||||||||||    
T  3227948 attctagagatcgtagaattggttttattttatt-ggatgatttaaacgagaattgatattgcttgtaaaatttattttatttgaagtatgaatttgtag 3228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 531
Target Start/End: Complemental strand, 43438670 - 43438591
Alignment:
Q  452 ttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| | |||||| |||| ||| || |||||| ||| |||||||||||||| | || |||||||||| |||||||||    
T  43438670 ttttacataaatacattcaaacatagataactttacatttaactcacttttatctaaaaacaattttacataatcaattc 43438591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 531
Target Start/End: Original strand, 14671117 - 14671182
Alignment:
Q  465 catccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||| |||||| |||| | |||||| ||||||||| ||||||||||||| ||| |||||||||    
T  14671117 catccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaattc 14671182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 29922034 - 29922072
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctacttgaagc 389  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  29922034 agaattgattttgcttgtagaattgattctagttgaagc 29922072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 275257 - 275294
Alignment:
Q  289 aaactcaaaagtgattctagagattgtagaattgattt 326  Q
    ||||||||||||||||||| || |||||||||||||||    
T  275257 aaactcaaaagtgattctaaaggttgtagaattgattt 275294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 628
Target Start/End: Complemental strand, 3977422 - 3977389
Alignment:
Q  595 aaacacttgtgagattgtttagaaaagcttatga 628  Q
    |||||||||||||||||||||||||| |||||||    
T  3977422 aaacacttgtgagattgtttagaaaaacttatga 3977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 29922993 - 29923058
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| |||||| |||| | ||||||||||||| ||  || ||||||||||||| |||||||||    
T  29922993 atccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattc 29923058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 614
Target Start/End: Complemental strand, 10391481 - 10391437
Alignment:
Q  570 cttatttgagcttacatgctggcataaacacttgtgagattgttt 614  Q
    ||||||| ||||||  ||||||||||| |||||||||||||||||    
T  10391481 cttatttaagcttatctgctggcataatcacttgtgagattgttt 10391437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 614
Target Start/End: Original strand, 10771819 - 10771863
Alignment:
Q  570 cttatttgagcttacatgctggcataaacacttgtgagattgttt 614  Q
    ||||||||||||||  | ||||||||| |||||||||||||||||    
T  10771819 cttatttgagcttatctactggcataagcacttgtgagattgttt 10771863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 609
Target Start/End: Original strand, 14706214 - 14706254
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagat 609  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  14706214 acttatttgagcttacctactgacataaacacttgtgagat 14706254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 34449489 - 34449545
Alignment:
Q  320 ttgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattga 376  Q
    |||||||||| ||||||||||||||||||  |||||  |||||| || |||||||||    
T  34449489 ttgattttattatgtttggatgatttaaagtagaattaattttgtttatagaattga 34449545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 38592206 - 38592246
Alignment:
Q  367 gtagaattgattctactt-gaagccagaatttgtagctttt 406  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  38592206 gtagaattgattctaatttgaagccagaatttgtagctttt 38592246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 299 - 537
Target Start/End: Original strand, 38516176 - 38516414
Alignment:
Q  299 gtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttg 398  Q
    |||||| |||||  |||| |||||||||||  ||| |||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||| | |||||     
T  38516176 gtgattatagaggatgtaaaattgattttaagatggttggatgacttaaagtagaattgattttgtttgtagaattgattctacttgaagctacaatttc 38516275  T
Q  399 tagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcac 498  Q
    ||  |||| | |||| |||| ||| |||| |||||| | |||||  || | | ||||||| | ||||||||||| ||||||||||||| |||||||||||    
T  38516276 taattttttatttctacaatcgatcttagccttaaattcattgttaaaactatttttacataaatacatccaaacataaatcactttacattcaactcac 38516375  T
Q  499 ttttatccataatcaattttacacaatcaattccctcaa 537  Q
    | ||||| | |||||||| |||| ||||||||| |||||    
T  38516376 tattatcgaaaatcaattctacaaaatcaattcactcaa 38516414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 24774826 - 24774919
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttga 386  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||||||||||| |||||| || ||| |||||||||||||||||| ||||    
T  24774826 tcaaaattgattctagagattctataattgattttagcatgtttggatgatttaaatgagaattgagtttacttgtagaattgattctaattga 24774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 295 - 516
Target Start/End: Original strand, 24183670 - 24183891
Alignment:
Q  295 aaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaa 394  Q
    |||||||||| |||||||||||||||| || |||| |||||| ||||||||  |   || | ||||||| |||| || ||||||||||||||||| | ||    
T  24183670 aaaagtgattttagagattgtagaatttatgttatgatgtttagatgatttgtagtggatttgattttgattgttgatttgattctacttgaagctataa 24183769  T
Q  395 tttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaac 494  Q
    ||| ||| ||||  | | |  ||||||||||||  ||||| ||||||   |||||||||||||| | |||||| |||| |||||||| |||  ||||||     
T  24183770 tttatagtttttggcatatataattgattttagctttaaatttattgataaatccacttttacatatatacattcaaatataaatcatttttcattcaat 24183869  T
Q  495 tcacttttatccataatcaatt 516  Q
    ||| |||||| || ||||||||    
T  24183870 tcatttttattcagaatcaatt 24183891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 4344684 - 4344763
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaa 372  Q
    ||||||||||||   |||||||||| ||||||||||  ||||||||||||||||||||| ||| |||||||||| |||||    
T  4344684 tcaaaagtgatttcggagattgtagtattgattttacaatgtttggatgatttaaaagaaaattgattttgcttatagaa 4344763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 532
Target Start/End: Original strand, 1373084 - 1373150
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattcc 532  Q
    ||||||| ||||||||||| |  ||||||||||||||||||| ||||||||||||| ||||||||||    
T  1373084 atccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcc 1373150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 530
Target Start/End: Original strand, 24776359 - 24776501
Alignment:
Q  392 gaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattc 491  Q
    ||||||||| ||||| |||||| ||||||||||||  |||||  |||||||  ||||| |||||||| | || | | |||  ||||||||||||| ||||    
T  24776359 gaatttgtaacttttgacttctacaattgattttacccttaattttattgttaaatccccttttacataaatgccttcaagcataaatcactttacattc 24776458  T
Q  492 aactcacttttatcc----ataatcaattttacacaatcaatt 530  Q
    || ||||||||||||    |||||||||| |||| ||||||||    
T  24776459 aaatcacttttatccatctataatcaattctacaaaatcaatt 24776501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 318 - 531
Target Start/End: Complemental strand, 43361503 - 43361288
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaa 417  Q
    ||||||||||  |||||||||||| ||||||| | | |  |||||||||||||||||||||| | ||||| | ||| | ||||| | ||  ||||| | |    
T  43361503 aattgattttgacatgtttggatgttttaaaataaatttaattttgcttgtagaattgattcaagttgaatctagagtgtgtagttattggcttctacta 43361404  T
Q  418 ttgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttat--attcaactcacttttatccataatcaat 515  Q
     ||||||||| | | || |||||||  | | |||||||||  | ||||||||||| | | ||||||||||  |||||||||||||||| | | || ||||    
T  43361403 ctgattttagccgtgaatttattgtttagttcacttttacctaaatacatccaaacacagatcactttatacattcaactcacttttagctagaaccaat 43361304  T
Q  516 tttacacaatcaattc 531  Q
    | |||| |||||||||    
T  43361303 tatacaaaatcaattc 43361288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 19649231 - 19649283
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttt 518  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||    
T  19649231 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaatttt 19649283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 536
Target Start/End: Complemental strand, 24095453 - 24095379
Alignment:
Q  462 atacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctca 536  Q
    |||||| |||| |||||||| ||||||| ||||| || ||||| ||| |||||||||||| ||||||||| ||||    
T  24095453 atacattcaaacataaatcaatttatatccaactaacctttatacatgatcaattttacataatcaattcactca 24095379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 35495083 - 35495148
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| | ||||||||||||||||||| ||||||||  || || |||||||||| |||||||||    
T  35495083 atccaaacacaaatcactttatattcaacccacttttaatcagaagcaattttacataatcaattc 35495148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 42624992 - 42624919
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattt 424  Q
    ||||| ||||||  ||||||||||||||||| ||||||| | | ||| |||||||| |||||| ||||||||||    
T  42624992 agaattgattttatttgtagaattgattctatttgaagctacagtttatagcttttaacttctacaattgattt 42624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 36779436 - 36779500
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| |||||| |||||| ||||||||||||||||  || |||||||| |||| ||||||||    
T  36779436 atccaaacataaattactttacattcaactcacttttaatcaaaatcaattctacaaaatcaatt 36779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 624
Target Start/End: Complemental strand, 7714382 - 7714327
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagctt 624  Q
    ||||||||||||||| ||  || ||||||||||||||||| ||||| |||||||||    
T  7714382 acttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagctt 7714327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 18355857 - 18355770
Alignment:
Q  451 cttttacacagatacatccaaagataaatcacttt-atattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||| ||  ||||||| |||||||||||| || | |||  ||||||||  |||||||||||||||| ||||||||| |||||    
T  18355857 cttttacacaaatgtatccaaatataaatcacttttatctccaagccacttttaatcataatcaattttacaaaatcaattcactcaa 18355770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 44121662 - 44121599
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattcta 381  Q
    ||||||||||||| ||||||||||||  |||||| ||| ||||||| ||||| | |||||||||    
T  44121662 aattgattttatcgtgtttggatgatcaaaaagacaattgattttgtttgtaaagttgattcta 44121599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 631
Target Start/End: Original strand, 1889065 - 1889127
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatgacat 631  Q
    ||||||||||| |||  | ||||||||||||||| ||||| ||||| | ||||||||||||||    
T  1889065 acttatttgagtttatctactggcataaacacttttgagactgtttgggaaagcttatgacat 1889127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 1892177 - 1892219
Alignment:
Q  592 cataaacacttgtgagattgtttagaaaagcttatgacatgtc 634  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  1892177 cataaacacttgtgagattgtttggcagagcttatgacatgtc 1892219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 432
Target Start/End: Complemental strand, 34462314 - 34462205
Alignment:
Q  323 attttatcatgtttggatgatttaaaag-agaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattga 421  Q
    ||||||||||||||| |||||||||||| ||||| | |||| |||||| |||| ||| |||||||| | | ||||| ||  |||||  |||| |||||||    
T  34462314 attttatcatgtttgaatgatttaaaagaagaattggttttccttgtataattaattttacttgaaactaaaatttatattttttc-tttctacaattga 34462216  T
Q  422 ttttagtctta 432  Q
    ||||| |||||    
T  34462215 ttttaatctta 34462205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 634
Target Start/End: Complemental strand, 1664509 - 1664444
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatgacatgtc 634  Q
    ||||||||||| |||  | || |||||||||||||||||| ||||| | | |||||||||||||||    
T  1664509 acttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtc 1664444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 503
Target Start/End: Complemental strand, 2764461 - 2764424
Alignment:
Q  466 atccaaagataaatcactttatattcaactcactttta 503  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  2764461 atccaaatataaatcactttatattcaacttactttta 2764424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 2778606 - 2778643
Alignment:
Q  466 atccaaagataaatcactttatattcaactcactttta 503  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  2778606 atccaaaaataaatcactttatcttcaactcactttta 2778643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 537
Target Start/End: Complemental strand, 4336638 - 4336577
Alignment:
Q  476 aaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||||| | |||||  ||||||||| ||| ||||||||||||| ||||||||| |||||    
T  4336638 aaatcacttcagattcagttcacttttagccacaatcaattttacaaaatcaattcactcaa 4336577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 10368068 - 10368129
Alignment:
Q  476 aaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||||  |||||||||||||||  || ||||||||||||| || |||||| |||||    
T  10368068 aaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaa 10368129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 10552965 - 10552920
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaatttta 519  Q
    |||||||| |||| |||||||||||||||| ||| |||||||||||    
T  10552965 ataaatcaatttacattcaactcacttttaaccaaaatcaatttta 10552920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 29970847 - 29970912
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| ||||||||||||| | |||||||||||||| | | |||||||| |||| | |||||||    
T  29970847 atccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattc 29970912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 15206741 - 15206793
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttt 518  Q
    ||||||| |||||||| || | |||||||||||||||| ||| ||||||||||    
T  15206741 atccaaacataaatcaattcacattcaactcacttttacccaaaatcaatttt 15206793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 43550936 - 43550988
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttt 518  Q
    ||||||| |||||||| || | |||||||||||||||| ||| ||||||||||    
T  43550936 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatttt 43550988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 1872389 - 1872253
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||| ||||   |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | || ||| ||    
T  1872389 tcaaaagtgattttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctag 1872290  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtc 429  Q
    |||||| || ||||  |||||||||||||||||||||    
T  1872289 aatttgcagtttttggcttctgcaattgattttagtc 1872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 473
Target Start/End: Complemental strand, 34805405 - 34805245
Alignment:
Q  312 ttgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcactt 411  Q
    ||||||||||||||||| ||| | || ||| ||||||  ||||| ||||||| |||| ||||| |||||||||||| | | ||||||||||||||  |||    
T  34805405 ttgtagaattgattttaacatttgtgtatgttttaaataagaattgattttgtttgtggaattaattctacttgaaactataatttgtagcttttagctt 34805306  T
Q  412 ctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaag 473  Q
     | || |||||||||  |||||| |||| ||| |||||||||||||||| ||||||||||||    
T  34805305 ttacacttgattttaaccttaaaattatagtcaaatccacttttacaca-atacatccaaag 34805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 402
Target Start/End: Complemental strand, 24804025 - 24803913
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttg----cttgtagaattgattctacttgaag 388  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||  | ||| |||||||    |||||||||||||||||| ||||||    
T  24804025 tcaaaagtgat-ctagaggttgtagaattgattatatcatgtttggatgatttaaagtacaattgattttgcttgcttgtagaattgattctatttgaag 24803927  T
Q  389 ccagaatttgtagc 402  Q
    | ||||||||||||    
T  24803926 ctagaatttgtagc 24803913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 516
Target Start/End: Complemental strand, 34800907 - 34800757
Alignment:
Q  365 ttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagata 464  Q
    ||||||||||||||  ||||||||| ||||||||||| ||||  ||||| |  |||||||||  |||||| |||||||| ||||||||||||  || |||    
T  34800907 ttgtagaattgatttcacttgaagctagaatttgtag-ttttggcttctacgcttgattttaaccttaaatttattgtcaaatccacttttatgcaaata 34800809  T
Q  465 catccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    |||||||| |||||||| |||  |  | |||||||||||| |||||||||||    
T  34800808 catccaaacataaatcaattttcaggccactcacttttatgcataatcaatt 34800757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 3816906 - 3816840
Alignment:
Q  317 gaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttg 385  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||    
T  3816906 gaattgattttattatgtttggatgatttaaaagagaatgga-tttgcttgtagaa-tgattctacttg 3816840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 458
Target Start/End: Complemental strand, 34776998 - 34776863
Alignment:
Q  315 tagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctg 414  Q
    ||||||| ||| ||||||||||| || |||||||  ||||| |||||||||||        |||| | ||||||| ||||||||||| ||||  || |||    
T  34776998 tagaatttattatatcatgtttgaattatttaaataagaattgattttgcttg--------attcaatttgaagctagaatttgtagattttggctactg 34776907  T
Q  415 caattgattttagtcttaaagttattgtcgaatccacttttaca 458  Q
    || |||||||| |||||||| |||||||| ||||||||||||||    
T  34776906 cacttgattttggtcttaaatttattgtcaaatccacttttaca 34776863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 531
Target Start/End: Original strand, 578915 - 579088
Alignment:
Q  358 attttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttac 457  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||| |||| |||||   | |||||||||| ||| || |||| ||  ||| |||||||      
T  578915 attttgcttgtagaattgatactacttgaagctagaatttttagtttttgacttccatagttgattttagccttgaatttatcgttcaattcactttt-- 579012  T
Q  458 acagatacat-ccaaagataaatcactttatattcaa-ctcacttttatccataatcaattttacacaatcaattc 531  Q
    ||  |||||| || || ||||||||||||| |||||| ||   ||||| ||| |||||||| |||| |||||||||    
T  579013 acctatacatacccaatataaatcactttacattcaaccttttttttagccagaatcaattatacataatcaattc 579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 539
Target Start/End: Complemental strand, 2494020 - 2493930
Alignment:
Q  449 cacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaatc 539  Q
    |||||||||| | ||| || |||| ||||||||| ||| ||||||| | ||| || |||||||||||||||||||||| || | |||||||    
T  2494020 cacttttacataaatatattcaaacataaatcaccttacattcaacgcgcttctagccataatcaattttacacaatccatccactcaatc 2493930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 7952707 - 7952643
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| ||| ||||||||||||||||||||||||||  |   |||||||||||| ||||||||    
T  7952707 atccaaatatacatcactttatattcaactcacttttagtcgggatcaattttacaaaatcaatt 7952643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 7953079 - 7953151
Alignment:
Q  469 caaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaatcaa 541  Q
    |||| |||||||||||||  ||||||||| ||||  ||| |||||||||| || ||||||||| |||||||||    
T  7953079 caaacataaatcactttaccttcaactcaattttggccagaatcaatttttcataatcaattcactcaatcaa 7953151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 531
Target Start/End: Original strand, 3525040 - 3525083
Alignment:
Q  488 attcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||    
T  3525040 attcaactcacttttagccacaatcaattttacataatcaattc 3525083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 521
Target Start/End: Complemental strand, 19260867 - 19260820
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttaca 521  Q
    ||||||| |||||||||||||||| ||||| ||| |||||||||||||    
T  19260867 ataaatccctttatattcaactcaattttagccagaatcaattttaca 19260820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 630
Target Start/End: Original strand, 34429646 - 34429705
Alignment:
Q  571 ttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatgaca 630  Q
    |||||||||||||  | || ||||||||||||| || ||||||| |||||||||||||||    
T  34429646 ttatttgagcttatctactagcataaacacttgagatattgtttggaaaagcttatgaca 34429705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 1499996 - 1500058
Alignment:
Q  469 caaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||| |||||||| |||| | ||||||| |||||| ||| ||||||||||||| |||||||||    
T  1499996 caaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattc 1500058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 2455950 - 2455892
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatg 627  Q
    |||||||||||||||  | | ||||||| |||||| |||||||||||||| ||||||||    
T  2455950 acttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatg 2455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 5724775 - 5724682
Alignment:
Q  313 tgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||||| |  |||||||||||| ||| |   ||||| |||||||| |  | ||||||||||||||||||| || ||||||| |||||    
T  5724775 tgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttt 5724682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 26692482 - 26692425
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||| || ||||||||||||||||||||  ||| |||| |||||||| |||||||||    
T  26692482 ataaaccagtttatattcaactcactttttgccaaaatctattttacaaaatcaattc 26692425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 615
Target Start/End: Original strand, 33080509 - 33080554
Alignment:
Q  570 cttatttgagcttacatgctggcataaacacttgtgagattgttta 615  Q
    ||||||||||||||  | ||||||||| ||||||||||||||||||    
T  33080509 cttatttgagcttatttactggcataagcacttgtgagattgttta 33080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 3816430 - 3816378
Alignment:
Q  464 acatccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||||| ||||| | | ||| |||||||||||||||||||| ||||||||    
T  3816430 acatccaaacataaagcgcattacattcaactcacttttatccagaatcaatt 3816378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 293 - 531
Target Start/End: Complemental strand, 26984645 - 26984409
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||  ||| | ||||||| ||||||||||||||||||||||||| |     
T  26984645 tcaaaagtgattctagaggttgtagaattgattttatgatgtttgaatgatttaaagtagacttgattttgtttgtagaattgattctacttgaagctaa 26984546  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattca 492  Q
     ||||||||| |||  ||| |   ||| ||||||  |||||| |||||||  ||||||||||||   | | |||| ||||  ||||||| |||| |||||    
T  26984545 gatttgtagc-tttggcttttatgattaattttacccttaaatttattgttaaatccacttttatgtaaaaacattcaaacgtaaatcaatttacattca 26984447  T
Q  493 actcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||  ||||||||| ||||| ||||||| |||||||||    
T  26984446 actc-tttttatccaaaatcagttttacataatcaattc 26984409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 537
Target Start/End: Original strand, 35105142 - 35105322
Alignment:
Q  357 gattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccactttta 456  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| ||||   |||| ||||||| ||||| |||||| | || |   ||||||||||||    
T  35105142 gattttgcttgtagaattgattctacttgaagctataatttgtagtttttggtttctacaattgactttagccttaaattcatcgataaatccactttta 35105241  T
Q  457 cacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    || | | ||||||||| ||||||||||||  ||||||  |||||| ||||| ||||||||||| | ||||||||| |||||    
T  35105242 cataaaaacatccaaacataaatcacttttcattcaatccactttcatccagaatcaattttaaaaaatcaattcactcaa 35105322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 314 - 530
Target Start/End: Original strand, 7168846 - 7169062
Alignment:
Q  314 gtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttct 413  Q
    |||||| |||||||   ||||||||||||||||||  ||||| ||||||||| |||||||||||||| | | |||| |||||||||||||||| ||||||    
T  7168846 gtagaaatgattttgatatgtttggatgatttaaattagaattgattttgctagtagaattgattctgcctaaagctagaatttgtagctttttacttct 7168945  T
Q  414 gcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatca 513  Q
       ||||||||||   ||||| ||||| |  ||| ||||||||   | ||| ||  |||  |||| ||||||| |||||||||||||||| ||| |||||    
T  7168946 atgattgattttatcattaaatttattattcaattcacttttatctaaatatattaaaatgtaaaccactttacattcaactcacttttaaccaaaatca 7169045  T
Q  514 attttacacaatcaatt 530  Q
    |||| | | ||||||||    
T  7169046 atttcaaaaaatcaatt 7169062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 367 - 485
Target Start/End: Original strand, 38453344 - 38453462
Alignment:
Q  367 gtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagataca 466  Q
    |||||||||||||||||||||||    ||||||| ||||| |||||| ||||||||||||| |||||| | ||||   |||||||||||||| | |||||    
T  38453344 gtagaattgattctacttgaagctgctatttgtaacttttgacttctacaattgattttagccttaaattcattgataaatccacttttacataaataca 38453443  T
Q  467 tccaaagataaatcacttt 485  Q
    |  ||| ||||||||||||    
T  38453444 ttaaaacataaatcacttt 38453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 15311267 - 15311203
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| |||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||    
T  15311267 atccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaatt 15311203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 35812246 - 35812359
Alignment:
Q  302 attctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctac--ttgaagccagaatttgt 399  Q
    ||||||||| || ||||||| |||| ||||| |||||||||||||||  ||||  |||| ||||||||||||| ||| |||  ||||| | |||||||||    
T  35812246 attctagaggttatagaattaatttcatcatatttggatgatttaaagaagaactgattatgcttgtagaatttattatacttttgaaactagaatttgt 35812345  T
Q  400 agcttttcacttct 413  Q
    ||||||| ||||||    
T  35812346 agcttttgacttct 35812359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 38453288 - 38453343
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaa 348  Q
    |||||||| ||||||||| |||||||||||||||||| || |||||||||||||||    
T  38453288 tcaaaagtaattctagaggttgtagaattgattttatgatatttggatgatttaaa 38453343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 537
Target Start/End: Original strand, 40491671 - 40491742
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||| |||||||||||||  |||||||||||||||  || ||||||||||||| ||||||||| |||||    
T  40491671 atccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaa 40491742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 293 - 467
Target Start/End: Complemental strand, 22915974 - 22915800
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||| ||||  ||||||||||||||||||||| |||||||||||| |  || |||  |||||| |||||||| | |||  ||| ||||  |     
T  22915974 tcaaaagtgattatagaacttgtagaattgattttatcatatttggatgatttgagggaaaattaattttgtttgtagaaataattacactcgaagttaa 22915875  T
Q  393 aatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacat 467  Q
     |||||||  |||| |||||| ||||||||||||  ||| || ||||||   ||| |||||||||| | ||||||    
T  22915874 catttgtaatttttgacttctacaattgattttaaccttgaatttattgctaaattcacttttacataaatacat 22915800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 38510411 - 38510361
Alignment:
Q  469 caaagataaatcactttatattcaactcacttttatccataatcaatttta 519  Q
    |||| ||||||||||||||||||||||||||||||| || || ||||||||    
T  38510411 caaacataaatcactttatattcaactcacttttattcaaaaacaatttta 38510361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 531
Target Start/End: Complemental strand, 42481883 - 42481817
Alignment:
Q  465 catccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||| || |||||||| |||| ||||||||||||||| | || ||||||||||||| |||||||||    
T  42481883 catccgaacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattc 42481817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 12306818 - 12306866
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| |||||||||||||| ||||||||||||||| ||| ||||||||    
T  12306818 ccaaacataaatcactttatcttcaactcacttttagccagaatcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 41787983 - 41788043
Alignment:
Q  299 gtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgat 359  Q
    ||||||| |||||||||| |||||||||||| ||||||| ||||| | || ||||||||||    
T  41787983 gtgattccagagattgtataattgattttattatgtttgaatgatatgaaggagaatcgat 41788043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 628
Target Start/End: Original strand, 34950081 - 34950140
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatga 628  Q
    ||||||||||||||| ||||||||| || ||||||||||| ||||  ||| |||||||||    
T  34950081 acttatttgagcttatatgctggcacaagcacttgtgagactgttgggaagagcttatga 34950140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 29829361 - 29829311
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| ||||||||||||| |||||||||| ||||| ||| ||||||||    
T  29829361 atccaaacataaatcactttacattcaactcatttttagccagaatcaatt 29829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 39634216 - 39634166
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| |||||||| || |||||||||||||||||| ||| ||||||||    
T  39634216 atccaaacataaatcaattcatattcaactcacttttaaccaaaatcaatt 39634166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 33076642 - 33076609
Alignment:
Q  351 agaatcgattttgcttgtagaattgattctactt 384  Q
    ||||| ||||||||||||||||||||||||||||    
T  33076642 agaattgattttgcttgtagaattgattctactt 33076609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 38123757 - 38123720
Alignment:
Q  367 gtagaattgattctacttgaagccagaatttgtagctt 404  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  38123757 gtagaattgattctacttgaagctagaaattgtagctt 38123720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 41386904 - 41386867
Alignment:
Q  369 agaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||||||||||||| || |||||||||||||    
T  41386904 agaattgattctacttgaagctaggatttgtagctttt 41386867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 48290504 - 48290561
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    |||||| ||||||||||||||||||||||   || ||||||||| || ||||||||||    
T  48290504 ataaattactttatattcaactcactttttgtcacaatcaatttcacgcaatcaattc 48290561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 516
Target Start/End: Original strand, 16079458 - 16079510
Alignment:
Q  464 acatccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||||| ||||||||||||  |||||||||||||| | ||| ||||||||    
T  16079458 acatccaaacataaatcacttttcattcaactcactttaaaccaaaatcaatt 16079510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 20088929 - 20088977
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| |||||||||||||  ||||||||||||||| ||| ||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 20088977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 38123811 - 38123768
Alignment:
Q  294 caaaagtgattctagagattgtagaattgattttatcatgtttgg 338  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  38123811 caaaattgattctagagat-gtagaattgattttaacatgtttgg 38123768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 41792360 - 41792484
Alignment:
Q  373 ttgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaa 472  Q
    ||||||| ||||||||  | || |||||| ||||  ||||| ||||||||||||   ||||| |||||||  |||| | ||||||  | || ||||||||    
T  41792360 ttgattccacttgaagttaaaacttgtagtttttggcttctacaattgattttaactttaaatttattgttaaatctatttttacttaaattcatccaaa 41792459  T
Q  473 gataaatcactttatattcaactca 497  Q
     | ||||||||||| ||||||||||    
T  41792460 cacaaatcactttacattcaactca 41792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 293 - 426
Target Start/End: Complemental strand, 30220375 - 30220242
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||| |     
T  30220375 tcaaaagtgattctagaggttgtataattgattatatgatgtttggatgatttaaagtagaattgattttgcttgtataattgattctacttgaagctat 30220276  T
Q  393 aatttgtagcttttcacttctgcaattgatttta 426  Q
    ||||||||| | ||  ||||| ||||||||||||    
T  30220275 aatttgtagttctttgcttctacaattgatttta 30220242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 415 - 537
Target Start/End: Original strand, 40642939 - 40643061
Alignment:
Q  415 caattgattttagtcttaaagttattgtcgaatccacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaa 514  Q
    |||||||||||||||||||| | |||||| |||| ||||||||||| |||| |||||| ||||||||||||| ||||||||  || ||||||| ||||||    
T  40642939 caattgattttagtcttaaattcattgtcaaatctacttttacacaaatacgtccaaacataaatcactttacattcaacttgctcttatccaaaatcaa 40643038  T
Q  515 ttttacacaatcaattccctcaa 537  Q
    ||||||| ||||||||| |||||    
T  40643039 ttttacagaatcaattcactcaa 40643061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 369 - 531
Target Start/End: Complemental strand, 3887538 - 3887376
Alignment:
Q  369 agaattgattctacttgaa-gccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttacacagatacat 467  Q
    |||||||||||||||| || || ||||||||||||||||  ||||| ||||||||||||| |||||| ||||| |  |||||||||||||| | ||||||    
T  3887538 agaattgattctacttaaaagctagaatttgtagcttttggcttctacaattgattttagccttaaatttattattaaatccacttttacataaatacat 3887439  T
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||| ||||| || |||| ||| ||||||| |||||| | |||| |||||||| || ||||||    
T  3887438 ccaaacataaaacattttacattgaactcacctttatctaaaatc-attttacaaaaccaattc 3887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 47978579 - 47978467
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccag 392  Q
    |||||||||||||||||  ||||||| || ||||||||| |||||||| ||||||| |||||| |||||| |||||||||||||||| | ||||| | ||    
T  47978579 tcaaaagtgattctagaagttgtagagtt-attttatcaagtttggattatttaaaggagaattgattttccttgtagaattgattccatttgaaactag 47978481  T
Q  393 aatttgtagctttt 406  Q
    ||||||||||||||    
T  47978480 aatttgtagctttt 47978467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 365 - 529
Target Start/End: Complemental strand, 15515163 - 15514998
Alignment:
Q  365 ttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttat--tgtcgaatccacttttacacaga 462  Q
    |||||||||||||||||| |||||| ||||||||||| ||||  ||||||||||| ||||||| |||  ||||||  |||  ||||||||||||||   |    
T  15515163 ttgtagaattgattctacatgaagctagaatttgtaggttttggcttctgcaattaattttagcctt-gagttatagtgttcaatccacttttacatgaa 15515065  T
Q  463 tacatccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaat 529  Q
    |  ||||||  ||||||| |||||  ||||||||||||||| | | | ||||||| ||| |||||||    
T  15515064 tttatccaatcataaatcgctttaccttcaactcacttttagctagactcaatttcacaaaatcaat 15514998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 4347035 - 4347100
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| |||||||| |||| |||||||||    
T  4347035 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 29759712 - 29759766
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttac 520  Q
    ||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  29759712 atccaaacataaatcattttacattcaactcacttttaaccataatcaattttac 29759766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 530
Target Start/End: Original strand, 45557397 - 45557458
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||| |||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  45557397 ccaaacataaatcactttatgttcgactcacttt-agccataatcaattttacacaatcaatt 45557458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 47836658 - 47836721
Alignment:
Q  310 gattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaatt 374  Q
    |||||| |||||||||||||||||||| ||||||| ||| || ||| ||||||||||||||||||    
T  47836658 gattgttgaattgattttatcatgttt-gatgattaaaaggaaaattgattttgcttgtagaatt 47836721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 47981860 - 47981796
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    ||||||| ||||||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||||||    
T  47981860 atccaaacataaatcactttaaattcaactcaattttaaccaaaattaattttacaaaatcaatt 47981796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 531
Target Start/End: Original strand, 13344836 - 13344899
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||| |||||||||||||  ||||||||||||||| ||| |||||||| |||| |||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattc 13344899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 35198916 - 35198983
Alignment:
Q  293 tcaaaagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgatt 360  Q
    |||||| |||||||| || ||| |||||||||||||||||||||| ||||||| || |||||| ||||    
T  35198916 tcaaaattgattctataggttgaagaattgattttatcatgtttgaatgatttgaaggagaattgatt 35198983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 35215431 - 35215498
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgctt-gtagaattgattctactt 384  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||| | | ||||||||||||||    
T  35215431 aattgattttatcatgttttgatgatttaaaggtgaattgattttgcttggaaaaattgattctactt 35215498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 516
Target Start/End: Complemental strand, 47978443 - 47978376
Alignment:
Q  449 cacttttacacagatacatccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    |||||| ||| | ||||||||||  ||||||||||||| |||||||||||||||| ||| ||||||||    
T  47978443 cactttgacataaatacatccaaccataaatcactttacattcaactcacttttacccaaaatcaatt 47978376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 40352452 - 40352517
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| ||||||||||||| ||| |||||||||||| ||| ||||||||  ||| |||||||||    
T  40352452 atccaaacataaatcactttacattaaactcacttttaaccaaaatcaattccacaaaatcaattc 40352517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 41521855 - 41521726
Alignment:
Q  297 aagtgattctagagattgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatt 396  Q
    ||||||||| |||  | ||||| |||||||||||||||||  || |||||||||| ||| || |||| ||| |||||||| | || ||||||  | ||||    
T  41521855 aagtgattcaagatgtcgtagagttgattttatcatgtttaaattatttaaaagataattgactttgtttggagaattgactttatttgaaggtaaaatt 41521756  T
Q  397 tgtagcttttcacttctgcaattgatttta 426  Q
    |  || |||| |||||| ||||||||||||    
T  41521755 taaagattttaacttctacaattgatttta 41521726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 4192572 - 4192639
Alignment:
Q  470 aaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    |||||||||||| | || ||||||||||||||||| || ||||||||||| | ||| ||||| |||||    
T  4192572 aaagataaatcaatctacattcaactcacttttattcaaaatcaattttatataattaattcgctcaa 4192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 28083975 - 28083940
Alignment:
Q  371 aattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28083975 aattgattctacttgaagctagaatttgtagctttt 28083940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 528
Target Start/End: Original strand, 29988397 - 29988460
Alignment:
Q  465 catccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaa 528  Q
    |||||||| | |||||||| || ||||||||||||||||| |||||||| ||| ||| ||||||    
T  29988397 catccaaacacaaatcactatacattcaactcacttttattcataatcattttcacataatcaa 29988460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 45660597 - 45660527
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattccctcaa 537  Q
    ||||||| |||||||||| ||  || ||||||||||||  || ||||||||||||| |||||||||||||||    
T  45660597 atccaaacataaatcactctacttt-aactcacttttagtcaaaatcaattttacagaatcaattccctcaa 45660527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 8318506 - 8318548
Alignment:
Q  306 tagagattgtagaattgattttatcatgtttggatgatttaaa 348  Q
    |||||||| ||||||||||||||| |||||||||| |||||||    
T  8318506 tagagattttagaattgattttattatgtttggataatttaaa 8318548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 25061287 - 25061337
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||||| |||||||| ||||| ||||||||||||||| ||| ||||||||    
T  25061287 atccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaatt 25061337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 26605057 - 26605103
Alignment:
Q  332 tgtttggatgatttaaaagagaatcgattttgcttgtagaattgatt 378  Q
    |||| ||||||||| ||||| ||| ||||||||||||||||||||||    
T  26605057 tgttaggatgatttcaaagataattgattttgcttgtagaattgatt 26605103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 41178823 - 41178881
Alignment:
Q  368 tagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgatttta 426  Q
    |||||||||| ||||||||||| ||||||||||| ||||  |||||  |||||||||||    
T  41178823 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 41178881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 638
Target Start/End: Original strand, 4276580 - 4276649
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatgacatgtcataa 638  Q
    |||||||||||||||  | ||||||||| || |||| ||| | ||| |||||||||||||||| ||||||    
T  4276580 acttatttgagcttatcttctggcataagcatttgttagactatttggaaaagcttatgacatttcataa 4276649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 5268322 - 5268367
Alignment:
Q  476 aaatcactttatattcaactcacttttatccataatcaattttaca 521  Q
    ||||||||||| ||||||||||||||||  || |||||||||||||    
T  5268322 aaatcactttacattcaactcacttttaggcagaatcaattttaca 5268367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 34875081 - 34875028
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaatttta 519  Q
    ||||||||||||||||||||| | |||||| ||||||| | | |||||||||||    
T  34875081 atccaaagataaatcactttacaatcaactgacttttagctagaatcaatttta 34875028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 614
Target Start/End: Original strand, 37593614 - 37593659
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgttt 614  Q
    ||||||||||||||| || ||||||||||||||||| ||| |||||    
T  37593614 acttatttgagcttatatactggcataaacacttgttagactgttt 37593659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 6021749 - 6021837
Alignment:
Q  318 aattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaattgattctacttgaagccagaatttgtagctttt 406  Q
    ||||||||||  || |||||  |||||| ||  ||||| |||||||| | |||||| ||||||||||||||| || || ||||||||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagctttt 6021837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 13990779 - 13990839
Alignment:
Q  312 ttgtagaattgattttatcatgtttggatgatttaaaagagaatcgattttgcttgtagaa 372  Q
    ||||||||||||||||||||| ||| ||| |||||||  |||||   ||||||||||||||    
T  13990779 ttgtagaattgattttatcatattttgattatttaaagaagaatttgttttgcttgtagaa 13990839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 614
Target Start/End: Complemental strand, 35017721 - 35017677
Alignment:
Q  570 cttatttgagcttacatgctggcataaacacttgtgagattgttt 614  Q
    ||||||||||||||  |  ||||||||||||||||||||||||||    
T  35017721 cttatttgagcttatctattggcataaacacttgtgagattgttt 35017677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 35961469 - 35961525
Alignment:
Q  474 ataaatcactttatattcaactcacttttatccataatcaattttacacaatcaatt 530  Q
    |||||||| ||||  ||||||||||||||| || ||||| |||||||| ||||||||    
T  35961469 ataaatcattttaccttcaactcacttttagccgtaatctattttacagaatcaatt 35961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 15321 - 15256
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  15321 atccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattc 15256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 516
Target Start/End: Complemental strand, 207163 - 207004
Alignment:
Q  359 ttttgcttgtagaattgattctacttgaagccagaatttgtagcttttcacttctgcaattgattttagtcttaaagttattgtcgaatccacttttac- 457  Q
    |||||||||||||||| |||||||||||||| |  | |||||||||||  ||||| |  || ||| ||| || ||| |||||||  |||||||||||||     
T  207163 ttttgcttgtagaattaattctacttgaagctactagttgtagcttttggcttctacttttaattgtagcctaaaatttattgttaaatccacttttaca 207064  T
Q  458 acagatacatccaaagat-aaatcactttatattcaactcacttttatccataatcaatt 516  Q
    | | ||| ||||||| || |||||| |||| |||||||||   |||||||| ||||||||    
T  207063 aaaaataaatccaaacataaaatcattttacattcaactcgaatttatccagaatcaatt 207004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 199431 - 199383
Alignment:
Q  468 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 516  Q
    ||||| |||||||||||||  ||||||||||||||| ||| ||||||||    
T  199431 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 199383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 65537 - 65602
Alignment:
Q  466 atccaaagataaatcactttatattcaactcacttttatccataatcaattttacacaatcaattc 531  Q
    ||||||| ||||||||||||| ||| |||||| ||||| ||| ||||||||| ||| |||||||||    
T  65537 atccaaacataaatcactttacattaaactcatttttaaccaaaatcaatttcacagaatcaattc 65602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 634
Target Start/End: Complemental strand, 6950 - 6885
Alignment:
Q  569 acttatttgagcttacatgctggcataaacacttgtgagattgtttagaaaagcttatgacatgtc 634  Q
    ||||||||||| |||  | || |||||||||||||||||| ||||| | | |||||||||||||||    
T  6950 acttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtc 6885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University