View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_4 (Length: 608)
Name: NF17051_high_4
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 590
Target Start/End: Original strand, 17687573 - 17688143
Alignment:
| Q |
10 |
attattctactattctaggctttgggatttatattttggtggtggatcttcaaactagatgtttcacgaatataaacaattgctggtatgagaaacaagc |
109 |
Q |
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| T |
17687573 |
attattctactattctaggctttggggtttatattttggtggtggatcttcaaactggatgtttcacgaatataaacaattgccggtatgagaaacaa-c |
17687671 |
T |
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| Q |
110 |
aaggctctcaattgttcaagtgtaatgtttgtttaattagtggggctaataatatcctgattattaagttatggtgtccttaacatacttatcatgtagg |
209 |
Q |
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| T |
17687672 |
aaggctctcaattgttcaagtgtaatgtttgtttaattagtggggctaataatatcctgattattaagttatagtgtccttaacatacttatcatgtagg |
17687771 |
T |
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| Q |
210 |
tagttcatatttgttattgtttcagtttatggtgtttttcattaatcatctttaatttgtttatgctgtagcgatcatgaataagcaacaatcgatggaa |
309 |
Q |
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| T |
17687772 |
tagttcatatttgttattgtttcagtttatggtgtttttcaataatcatctttaatttatttatgctgtagcgatcatgaataagcaacaattgatgaaa |
17687871 |
T |
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| Q |
310 |
tctgaaatgttcttaagcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctca |
409 |
Q |
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| T |
17687872 |
tctgaaatgttcttaagcacatttataatcaaatctggtatgtagtttaatttctccat--caaaaaagaattgatggaatatctccatcaatgtgctca |
17687969 |
T |
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| Q |
410 |
agaagaactaacctcatatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatt |
509 |
Q |
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| T |
17687970 |
agaaaaactaacctcatctttctgtttgattataaatgttcttctactacttacatgttcttaagcatatttataatcaaatccgatatgtaatttaatt |
17688069 |
T |
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| Q |
510 |
tctttatttgggacaaacttataagttataacctcatctctctttatgctcttctactttggatatctctatatattatat |
590 |
Q |
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| T |
17688070 |
tctttatttgggacaaac-------ttataacctcatctctctttatgctcttctactttggatatctccatatattatat |
17688143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 316 - 591
Target Start/End: Original strand, 37983121 - 37983386
Alignment:
| Q |
316 |
atgttcttaagcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctcaagaaga |
415 |
Q |
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| T |
37983121 |
atgttcttaagcacatttataatcaaatctggtatgtagtttaatttctccatcaaaaaagaa--ttgatggaatatctccatcaatgtgctcaataaaa |
37983218 |
T |
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| Q |
416 |
actaacctcatatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttcttta |
515 |
Q |
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| T |
37983219 |
actaacctcatctttctgtttgattataaatgttcttctactacttacatgttcctaagcat-tttataatcaaatccgatatgtaatttaatttcttta |
37983317 |
T |
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| Q |
516 |
tttgggacaaacttataagttataacctcatctctctttatgctcttctactttggatatctctatatattatatt |
591 |
Q |
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| T |
37983318 |
tttgggacaaac-------ttataacttcatctctctttatgctcttctactttggatatctctatatattatatt |
37983386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 312 - 590
Target Start/End: Complemental strand, 22000979 - 22000710
Alignment:
| Q |
312 |
tgaaatgttcttaagcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctcaag |
411 |
Q |
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| T |
22000979 |
tgaaattttcttaagcacatttataatcaaatctggtatgtagtttaatttctccatcaaaaaagaa--ttgatggaatatctccatcaatgtgctcaag |
22000882 |
T |
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| Q |
412 |
aagaactaacctcatatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttc |
511 |
Q |
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| T |
22000881 |
aaaaactaacctcatctttctgtttgattataaatgttcttctactacttacatgttcttaagtatatttataatcaaatccgatatgtaatttaatttc |
22000782 |
T |
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| Q |
512 |
tttatttgggacaaacttataagttataacctcatctctctttatgctcttctactttggatatctctatatattatat |
590 |
Q |
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| T |
22000781 |
tttatttgggacaaactt-------ataacctcatctctctttatgctcttctactttggatatctccatatattatat |
22000710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 30834247 - 30834194
Alignment:
| Q |
283 |
atcatgaataagcaacaatcgatggaatctgaaatgttcttaagcatatttata |
336 |
Q |
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| T |
30834247 |
atcatgaatgagcaacaattgatggaatccaaaatgttcttatgcacatttata |
30834194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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