View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_5 (Length: 550)
Name: NF17051_high_5
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 11710628 - 11710110
Alignment:
| Q |
16 |
caatatgtgcctagaacaatagaaaaatttaaaaccataagcagagcttccacgattttttattcatgggtacggttgtccaaaagccctttgannnnnn |
115 |
Q |
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| T |
11710628 |
caatatgtgcctagaacaatagaaaaatttaaaaccataagcagagcttccatgatttttt---catgggtatggttgtccaaaagccctttgatttttt |
11710532 |
T |
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| Q |
116 |
naagttttcctttccccatagttagctctagtcaaatcatgggaaagaaggaaaggattactatacttacttgtaaagggaatcctcgtatgatgtagac |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11710531 |
taagttttcctttccccatagctagctctagtcaaatcatgggaaagaaggaaaggattactatacttacttgtaaagggaatcctcgtatgatgtagac |
11710432 |
T |
|
| Q |
216 |
gattcttctttgttggcatctctttcagtctgaagtttctctagctgctgatcaatggttgctaaaaacaaatgaggatgggtttgcaaaatttgttcca |
315 |
Q |
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| T |
11710431 |
gattcttctttgttggcatctctttcagtctgaagtttctctagctgctgatcaatggttgctaaaaacaaatgaggatgggtttgcaaaatttgttcca |
11710332 |
T |
|
| Q |
316 |
acagctgaccaactggtgactcaaattggagaggaggagaaggcacaaaattatcacttgaatctgtagatgctctcacaactaaccctctacctcgaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11710331 |
acagctgaccaactggtgactcaaattggagaggaggagaaggcacaaaattatcacttgaatctgtagatgctctcacaactaaccctctacctcgaaa |
11710232 |
T |
|
| Q |
416 |
actgtagggttcattgtagtgtttggcattataagatggaggacaactctgcagagnnnnnnncacgtaacagctatttagttgctgaaaattcctccaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11710231 |
actgtagggttcattgtagtgtttggcattataagatggaggacaactctgcagagaaaaaaacacgtaacagctatttagttgctgaaaattcctccaa |
11710132 |
T |
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| Q |
516 |
caaaatgacatacattttagta |
537 |
Q |
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|||||||||||||||||||||| |
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| T |
11710131 |
caaaatgacatacattttagta |
11710110 |
T |
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