View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_high_6 (Length: 503)
Name: NF17051_high_6
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 34669184 - 34668702
Alignment:
| Q |
1 |
ttgatttcccctgcagctgcttataaaattggttagcatctatgtagctttccttttgcattattgcatgttaggaatagatctagtaattgtttctctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669184 |
ttgatttcccctgcagctgcttataaaattggttagcatctatgtagctttccttttgcattattgcatgttaggaatagatctagtaattgtttctctg |
34669085 |
T |
|
| Q |
101 |
tctttgaaatttgcaggcgatatgaaaaataatcctttggctatgtatgttggtgacatcatgaccgtaagtttttcattcttcttatcgactagatttc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669084 |
tctttgaaatttgcaggcgatatgaaaa-taatcctttggctatgtatgttggtgacatcatgaccgtaagtttttcattcttcttatcgactagatttc |
34668986 |
T |
|
| Q |
201 |
cgtctcatacttctgagttgattatatattaatgttaactagacaaatagtgttagtttaaagtttggagttgtactattgaaattaaacttgattcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34668985 |
ggtctcatacttctgagttgattatatattaatgttaactagaaaaatagtgttagtttaaagtttggagttgtactattgaaattaaacttgattcatg |
34668886 |
T |
|
| Q |
301 |
cacgagttactaaagtttataaaactttgaccacttgagcaggccacagaactgctggtttatgccgtagatgatatatatgcaatctaacaaaccaaga |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34668885 |
cacgagttactaaagtttatagaactttgaccacttgagcaggccacagaactgctggtttatgccgtagatgatatatatgcaatctaacaaaccaaga |
34668786 |
T |
|
| Q |
401 |
aatttcttaattaatcaataactgcagggttttgcattgtattactaccttaaattgctaggtctagttactccataaaggagt |
484 |
Q |
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| T |
34668785 |
aatttcttaattaatcaataactgcagggttttgcattgtattactaccttaaattgctaggtctagttactccataaaggagt |
34668702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 18186352 - 18185884
Alignment:
| Q |
14 |
cagctgcttataaaattggttagcatctatgtagctttccttttgcattattgcatgttaggaatagatctagtaattgtttctctgtctttgaaatttg |
113 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||| |||| ||||||| ||||| |
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| T |
18186352 |
cagctgcttataaaattggttagcatctgtgtagctttccttttgcattattgcatgttagtgcctgcaatagtaatcgtt-ctctttctttgacatttg |
18186254 |
T |
|
| Q |
114 |
caggcgatatgaaaaataatcctttggctatgtatgttggtgacatcatgaccgtaagtttttcattcttcttatcgactagatttccgtctcatacttc |
213 |
Q |
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|||| || | ||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| | ||||||||| |||||||||||| |
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| T |
18186253 |
caggtgaaaagaaaaatgatcctttggctatgtatgctggtgacatcatgactgtaagtatttcattcttcttattggctagatttctgtctcatacttc |
18186154 |
T |
|
| Q |
214 |
tgagttg-------attatatattaatgttaactagacaaatagtgttagtttaaagtttggagttgtactattgaa----------------attaaac |
290 |
Q |
| |
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||| || ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
18186153 |
tgaattctgatctcattatatgttaatgttaactagacaaatagtgttagtttgaggtttggagttgtactattgaacttcaactccattgaaattaaac |
18186054 |
T |
|
| Q |
291 |
ttgattcat-----gcacgagttactaaagtttataaaactttgaccacttgagcaggccacagaactgctggtttatgccgtagatgatatatatgcaa |
385 |
Q |
| |
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||||||||| | |||||||||||||||||||| | || ||| | ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
18186053 |
ttgattcataacgagtacgagttactaaagtttatagagctctgagctattgagcaggccacagaattgctggtttatgccttagatgatatatattcaa |
18185954 |
T |
|
| Q |
386 |
tct-aacaaaccaagaaatttcttaattaatcaataactgcagggt-tttgcattgtattactaccttaa |
453 |
Q |
| |
|
||| ||||| |||| |||| ||||||||||||||||||||| |||| ||||||||||||| |||||||| |
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|
| T |
18185953 |
tctaaacaatccaataaatatcttaattaatcaataactgctgggtcgttgcattgtattagtaccttaa |
18185884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 2167493 - 2167455
Alignment:
| Q |
278 |
attgaaattaaacttgattcatgcacgagttactaaagt |
316 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
2167493 |
attgaaattaaacttgattcatgcacgggttactaaagt |
2167455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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