View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_low_1 (Length: 865)
Name: NF17051_low_1
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 13 - 662
Target Start/End: Original strand, 33479042 - 33479692
Alignment:
| Q |
13 |
agaacctgtgcttgaactcgagcattagtaaaaatgtaagttggggttgatagctttagaaaaggtgagttttcatgtccacacgacaaaaataaggagg |
112 |
Q |
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| T |
33479042 |
agaacttgtgcttgaactcgagcattagtaaaaatgtaagttggggttgatagctttagaaaaggtgagttttcatgtccacataacaaaaataaggagg |
33479141 |
T |
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| Q |
113 |
ggaattgaatttgaacctgatgtcttatatctcttaacccgtaatctgcttcaacaatatcatcaagcgaccttatttataattgaagttatatagatag |
212 |
Q |
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| T |
33479142 |
ggaattgaatttgaacctgatgtcttatatctcttaacccgtaatctgcttcaacaatatcatcaaacgaccttatttataattgaagttatatagatag |
33479241 |
T |
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| Q |
213 |
atatacagtcttatatacaattatatctagagttctttaacttaatttaaagctttaaacaaagnnnnnnnnnnnnnnnnnnnatcttatgacaaattag |
312 |
Q |
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| T |
33479242 |
atatacagtcttatatacaattatatctagagttctttaacttaatttaaagctttaaacaaagttttttattttatttttttatcttctgacaaattag |
33479341 |
T |
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| Q |
313 |
tcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatg-tcagttgtaaatttttgtacacgttcacttcataatttaatga |
411 |
Q |
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| T |
33479342 |
tcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatggtcagttgtaaatttgtgtacacgttcacttcataatttaatga |
33479441 |
T |
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| Q |
412 |
tctactataaagaatgtttcacaactctgtactataattagactcttgttgacaacaatagagtggcaattttggagaaaaattgaaaagatcatattct |
511 |
Q |
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| T |
33479442 |
tctactataaagaatgtttcacaactcagtactataattagactcttgttgacaacaatagagtggcaattttggagaaaatttgaaaagatcatattct |
33479541 |
T |
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| Q |
512 |
catttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatattcttaaatggtcaagagc |
611 |
Q |
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| T |
33479542 |
catttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatattcttaaatggtcaagagc |
33479641 |
T |
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| Q |
612 |
gaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
662 |
Q |
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| T |
33479642 |
gaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
33479692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 649 - 844
Target Start/End: Original strand, 33480679 - 33480875
Alignment:
| Q |
649 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
748 |
Q |
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| T |
33480679 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
33480778 |
T |
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| Q |
749 |
atcgaattctggagttgacgaattaatactcttcataacactgattttcataacaaatggtaatagctatcttctct-ccatcatggctcttctccg |
844 |
Q |
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| T |
33480779 |
atcgaattctggagttgacgaattaatactcttcataacactgattttcataacaaatggtaatagctatcttctctcccatcatggctcttctccg |
33480875 |
T |
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