View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_low_10 (Length: 453)
Name: NF17051_low_10
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 38998545 - 38998123
Alignment:
| Q |
16 |
caaatcataaaccaagtaaccgttacttcatcctagagtggcctattagcaccaaccgaagacaaaaggccaacatgatccttataagaaccacttcagc |
115 |
Q |
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| T |
38998545 |
caaatcataaaccaagtaaccgttacttcatcctagagtggcctatgagcaccaaccgaagacaaaaggccaacatgatccttataagaaccacttcaac |
38998446 |
T |
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| Q |
116 |
aaagtgcaaaataaccaaagttatcgaatttgatctttacatggacaattattttataatgatggcaaattaaaaggtattgtttagaagaagaaaaaga |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998445 |
aaagtgcaaaataaccaaagttatggaatttgatctttacatggacaattattttataatgatggcaaattaaaaggtattgtttagaagaagaaaaaga |
38998346 |
T |
|
| Q |
216 |
gtacttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaacataagaaaagggtaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998345 |
gtacttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaacataagaaaagggtaaaaa |
38998246 |
T |
|
| Q |
316 |
atgtcacttcaacatgccatgatccatataacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggaggaattccatcatctccta |
415 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998245 |
atgtcacttcaacatgtcatgatccataaaacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggaggaattccatcatctccta |
38998146 |
T |
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| Q |
416 |
aaatgcctacatcccatcctttg |
438 |
Q |
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| T |
38998145 |
aaatgcctacatcccatcctttg |
38998123 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 30437570 - 30437612
Alignment:
| Q |
264 |
tggaggaagcttcaatgtacgtttacctcctaacataagaaaa |
306 |
Q |
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| T |
30437570 |
tggaggaagcttcaatgtacgtttacctcttaatataaaaaaa |
30437612 |
T |
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