View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17051_low_20 (Length: 330)

Name: NF17051_low_20
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17051_low_20
NF17051_low_20
[»] chr1 (7 HSPs)
chr1 (16-314)||(47627685-47627984)
chr1 (11-96)||(47593654-47593739)
chr1 (16-91)||(6525555-6525630)
chr1 (16-100)||(47574902-47574986)
chr1 (25-96)||(21936674-21936745)
chr1 (11-94)||(47584582-47584665)
chr1 (16-89)||(47698625-47698698)
[»] chr8 (1 HSPs)
chr8 (11-100)||(10401422-10401511)
[»] chr5 (2 HSPs)
chr5 (20-101)||(28859753-28859834)
chr5 (16-94)||(469746-469824)
[»] chr6 (2 HSPs)
chr6 (30-101)||(20233500-20233571)
chr6 (30-101)||(22127484-22127555)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-101)||(7424-7509)
[»] chr7 (1 HSPs)
chr7 (16-64)||(20264210-20264258)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 47627685 - 47627984
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaattcatgttcatttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627685 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaattcatgttcatttga 47627784  T
Q  116 atcacgtcgtatcgatgatctcttaagtcacgtgagtatccaaatcctatttgtttttctctgtattttattgttagttccttatatagatccc-aaaaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47627785 atcacgtcgtatcgatgatctcttaagtcacgtgagtatccaaaccctatttgtttttctctgtattttattgttagttccttatatagatcccaaaaaa 47627884  T
Q  215 tgcaaattaataaggaaaataatcaggaaatgaaatgtattatatttatggtttcaggcttggaatcaatggaaagatgaatcaccatttcagatgctgg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627885 tgcaaattaataaggaaaataatcaggaaatgaaatgtattatatttatggcttcaggcttggaatcaatggaaagatgaatcaccatttcagatgctgg 47627984  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 47593654 - 47593739
Alignment:
Q  11 agaaaatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaa 96  Q
    |||| ||||||||| |||||| |||||||||||||| ||||||||||||||||| || || ||| | |||||||||| ||||||||    
T  47593654 agaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcattgttttagagattattactggaaaaa 47593739  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 6525555 - 6525630
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtgg 91  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||  || |||| |||||||| |||||    
T  6525555 atgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgtattgattcttgagattataagtgg 6525630  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 47574902 - 47574986
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaa 100  Q
    |||||||||||||| | ||||| | |||||||||||| | |||||| ||| | |||||||| || |||||||||||||| |||||    
T  47574902 atgcaatgcatggatatttttctgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa 47574986  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 21936674 - 21936745
Alignment:
Q  25 atggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaa 96  Q
    ||||||| ||||||| |||||| ||||||||||| || || ||  |||| || |||||||||||||||||||    
T  21936674 atggacatttttcagtgaagtccgatgtttttagcttcggtgttgtggtacttgagattattagtggaaaaa 21936745  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 47584582 - 47584665
Alignment:
Q  11 agaaaatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaa 94  Q
    |||| |||| ||||||||| | ||||| | ||| || ||||| | |||||||||| | |||||||| |||||||||||||||||    
T  47584582 agaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaa 47584665  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 47698625 - 47698698
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagt 89  Q
    ||||||||||||||||| ||||||| || || || ||||| ||||||||||| || ||| | ||||| ||||||    
T  47698625 atgcaatgcatggacaactttcagaaaaatcggacgttttcagttttggagtcatagttttggagataattagt 47698698  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 10401511 - 10401422
Alignment:
Q  11 agaaaatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaa 100  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||| |||||||||||| ||| || | || ||||||| |||||| |||||    
T  10401511 agaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaa 10401422  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 28859834 - 28859753
Alignment:
Q  20 aatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaat 101  Q
    |||||||||| ||||||||| ||| || ||||| ||||||||||| ||  ||||||| |||||||| |||||  ||||||||    
T  28859834 aatgcatggagaattttcagtgaaatcagatgtctttagttttggtgttctggttcttgagattataagtggccaaaagaat 28859753  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 469824 - 469746
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaa 94  Q
    |||||||||| ||||||||||| ||||| || ||||| || ||||||||||| ||  |||| |||||  ||||||||||    
T  469824 atgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagttataattcttgagatagttagtggaaa 469746  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 20233500 - 20233571
Alignment:
Q  30 caattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaat 101  Q
    |||||||| ||||| |||||||||| |||||||||||| |||||| | || |||||||  ||||| ||||||    
T  20233500 caattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaat 20233571  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 22127484 - 22127555
Alignment:
Q  30 caattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaat 101  Q
    |||||||| ||||| |||||||||| |||||||||||| |||||| | || |||||||  ||||| ||||||    
T  22127484 caattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaat 22127555  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 7424 - 7509
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaat 101  Q
    ||||||||| |||||||||||| || || |||||  ||| |||||||||||| ||| || | |||||||||  |||||| ||||||    
T  7424 atgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctggaaagaagaat 7509  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 20264210 - 20264258
Alignment:
Q  16 atgcaatgcatggacaattttcagagaagtctgatgtttttagttttgg 64  Q
    |||||||||| |||  ||||||||||||||| ||||||||||| |||||    
T  20264210 atgcaatgcaaggattattttcagagaagtcagatgtttttagctttgg 20264258  T

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