View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17051_low_23 (Length: 295)
Name: NF17051_low_23
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 5051794 - 5052070
Alignment:
| Q |
1 |
catccatatatcatctgataagttctccatgttgactgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaattttaattggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5051794 |
catccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaatttaaattggat |
5051893 |
T |
|
| Q |
101 |
aatggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcatga |
200 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
5051894 |
aattgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacga |
5051993 |
T |
|
| Q |
201 |
ggagaagattgaggggacgtgacatttgatatctattagatgtgttctttaaccccctcattcccgttacttactgc |
277 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5051994 |
ggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgc |
5052070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 51273565 - 51273452
Alignment:
| Q |
10 |
atcatctgataagttctccatgttgactgtagtatatattgctaatagattgt-atgttcacgagctattacctaccaaattttaattggataatggatt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||| | ||||| ||||||| ||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
51273565 |
atcatctgataaattctccatgttgattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggataatcgatt |
51273466 |
T |
|
| Q |
109 |
ttgatacttagttg |
122 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
51273465 |
ctgatacttggttg |
51273452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University