View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_low_24 (Length: 282)
Name: NF17051_low_24
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_24 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 95 - 282
Target Start/End: Original strand, 18106893 - 18107080
Alignment:
| Q |
95 |
actccattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcatattgctcagtttaactattaa |
194 |
Q |
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| T |
18106893 |
actcaattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatgtgggagtcttcatattgctcagtttaactattaa |
18106992 |
T |
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| Q |
195 |
gctttatgatataggtgttatgcgcataaaagggaagctttatgatgtctgattttatattcctcagcatacatagttcagcttctct |
282 |
Q |
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| T |
18106993 |
gctttatgatataggtgttatgcgcataaaagggaagctttatgatgtctgattttatattcctcagcatacatagttcagcttctct |
18107080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 18082610 - 18082688
Alignment:
| Q |
23 |
ttatggagttatttagaaactgtagttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
101 |
Q |
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| T |
18082610 |
ttatgaagttgtttagaaactgtagttttgtatgtgtggcagatgaacatgtgtctaattccagagttctatactccat |
18082688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 18107108 - 18107143
Alignment:
| Q |
243 |
ctgattttatattcctcagcatacatagttcagctt |
278 |
Q |
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| T |
18107108 |
ctgattttatattccccagcatacatagttcagctt |
18107143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 37876249 - 37876388
Alignment:
| Q |
117 |
ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcatattgctcagtttaactattaagctttatgatataggtgttatg |
216 |
Q |
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| T |
37876249 |
ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatg |
37876348 |
T |
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| Q |
217 |
cgcataaaagggaagctttatg-atgtctgattttatatt |
255 |
Q |
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| T |
37876349 |
cgcataaaagggaagttttatgaatgcctgattttatatt |
37876388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 37875737 - 37875787
Alignment:
| Q |
51 |
tgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
101 |
Q |
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| T |
37875737 |
tgtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat |
37875787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 23895432 - 23895293
Alignment:
| Q |
117 |
ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcatattgctcagtttaactattaagctttatgatataggtgttatg |
216 |
Q |
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| T |
23895432 |
ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatg |
23895333 |
T |
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| Q |
217 |
cgcataaaagggaagctttatg-atgtctgattttatatt |
255 |
Q |
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| T |
23895332 |
cgcataaaagggaagttttatgaatgcctgattttatatt |
23895293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 23895947 - 23895894
Alignment:
| Q |
48 |
ttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
101 |
Q |
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| T |
23895947 |
tttngtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat |
23895894 |
T |
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