View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_low_25 (Length: 278)
Name: NF17051_low_25
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 10104015 - 10103904
Alignment:
| Q |
152 |
ctataagtttgtttgaaatatgtttcatgtttctagcttgtctataaattgagtcactcacagccctcactttccattcattcattcctcctctcttctt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10104015 |
ctataagtttgtttgaaatatgtttcatgtttctagcttgtctataaattgagtcactcacaaccctcactttccattcattcattcctcctctcttctt |
10103916 |
T |
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| Q |
252 |
tgcttttcattt |
263 |
Q |
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|||||||||||| |
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| T |
10103915 |
tgcttttcattt |
10103904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10104168 - 10104080
Alignment:
| Q |
1 |
tactttttcaccttt-ccttttttgtgcttcatctctaacaaacaaagcacacaccatactttttcacattcatctttggcgtgtgaag |
88 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10104168 |
tactttttcaccttttccttttttgtgcttcatctctaacaaacaaagcacacaccatactttttcacattcatctttggcgtgtgaag |
10104080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 10090556 - 10090446
Alignment:
| Q |
153 |
tataagtttgtttgaaatatgtttcatgtttctagcttgtctataaattgagtcactcacagccctcactttccattcattcattcctcctctcttcttt |
252 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||| | |||||| |
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| T |
10090556 |
tataagtttgtttaaagtatgtttcatgtttctagcttgtctataaattgagtcattcacaaccctcattttcccttcattcattcctcctgttttcttt |
10090457 |
T |
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| Q |
253 |
gcttttcattt |
263 |
Q |
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|| |||||||| |
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| T |
10090456 |
gcatttcattt |
10090446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 10086482 - 10086425
Alignment:
| Q |
188 |
cttgtctataaattgagtcactcacagccctcactttccattcattcattcctcctct |
245 |
Q |
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| T |
10086482 |
cttgtctataaattgagtcactcacaatcctcactttccattcattcattcctcctct |
10086425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 10084130 - 10084057
Alignment:
| Q |
189 |
ttgtctataaattgagtcactcacagccctcactttccattcattcat----tcctcctctcttctttgctttt |
258 |
Q |
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| T |
10084130 |
ttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctttgctttt |
10084057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10090686 - 10090600
Alignment:
| Q |
1 |
tactttttcaccttt--ccttttttgtgcttcatctctaacaaacaaagcacacaccatactttttcacattcatctttggcgtgtgaag |
88 |
Q |
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||||||||||||||| || |||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
10090686 |
tactttttcacctttttccattttcgtgtctcatctctaacaaacaag---cacactatactatttcacattcatctttggcgtctgaag |
10090600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 10079931 - 10079884
Alignment:
| Q |
189 |
ttgtctataaattgagtcactcacagccctcactttccattcattcat |
236 |
Q |
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||||||||||||||||||| ||||| ||| || ||||||||||||||| |
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| T |
10079931 |
ttgtctataaattgagtcagtcacaacccacattttccattcattcat |
10079884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 10102148 - 10102088
Alignment:
| Q |
188 |
cttgtctataaattgagtcactcacagccctcactttccattcattcattcctcctctcttct |
250 |
Q |
| |
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|||||| |||||||| ||| ||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
10102148 |
cttgtcaataaattg--tcaatcacagctctcactttccattcatccatccctcctctcttct |
10102088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 10096586 - 10096512
Alignment:
| Q |
188 |
cttgtctataaattgagtcactcacagccctcactttccattcattcat----tcctcctctcttctttgctttt |
258 |
Q |
| |
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|||||||||||||| ||||| | ||| | | || ||||||||||||||| |||||||||||||||||||||| |
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| T |
10096586 |
cttgtctataaattcagtcagttacaactcacattttccattcattcatccactcctcctctcttctttgctttt |
10096512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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