View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17051_low_26 (Length: 248)
Name: NF17051_low_26
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17051_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 12884346 - 12884272
Alignment:
| Q |
168 |
tttactacccccataacaaccttcatattgaaccaattcccacccgcaggttcctccagcaacacaatattcttc |
242 |
Q |
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| T |
12884346 |
tttactaccctcataacaaccttcatattgaaccaattcccacccgcaggttcctccagcaacacaatattcttc |
12884272 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12884533 - 12884447
Alignment:
| Q |
46 |
ttccatttcgttaaagaagccttccttttggtttgaaagtgaattcattctagggaacctaacacgaagagggttatcacccaccca |
132 |
Q |
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| T |
12884533 |
ttccatttcgttaatgaggcctttcttttggtctgaaagtgaataaatttgagggaacctaacacgaagagggttatcacccaccca |
12884447 |
T |
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