View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17051_low_29 (Length: 237)

Name: NF17051_low_29
Description: NF17051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17051_low_29
NF17051_low_29
[»] chr4 (9 HSPs)
chr4 (140-212)||(7982766-7982838)
chr4 (139-218)||(28910939-28911018)
chr4 (138-218)||(2357703-2357783)
chr4 (137-218)||(46258554-46258635)
chr4 (140-218)||(46029738-46029816)
chr4 (138-217)||(47806519-47806597)
chr4 (138-170)||(28909872-28909904)
chr4 (133-201)||(42733585-42733653)
chr4 (142-198)||(54182497-54182553)
[»] chr7 (5 HSPs)
chr7 (140-200)||(3868180-3868240)
chr7 (138-218)||(36718979-36719058)
chr7 (14-88)||(6222332-6222405)
chr7 (137-180)||(36718242-36718285)
chr7 (130-168)||(6222295-6222333)
[»] chr2 (2 HSPs)
chr2 (139-218)||(35413579-35413658)
chr2 (173-217)||(16215994-16216038)
[»] chr5 (3 HSPs)
chr5 (142-208)||(2413215-2413281)
chr5 (147-212)||(23074804-23074869)
chr5 (138-201)||(2414380-2414443)
[»] chr1 (12 HSPs)
chr1 (138-218)||(14949023-14949103)
chr1 (139-218)||(18527048-18527127)
chr1 (138-208)||(270628-270698)
chr1 (138-212)||(14939006-14939080)
chr1 (138-212)||(14944250-14944324)
chr1 (138-212)||(50616295-50616369)
chr1 (138-212)||(50624123-50624197)
chr1 (131-198)||(14940427-14940494)
chr1 (131-198)||(14950434-14950501)
chr1 (131-198)||(14954675-14954742)
chr1 (138-202)||(42105656-42105719)
chr1 (164-200)||(1547703-1547739)
[»] chr6 (1 HSPs)
chr6 (135-197)||(4175861-4175923)
[»] chr8 (2 HSPs)
chr8 (139-200)||(16939112-16939173)
chr8 (139-218)||(8790540-8790619)
[»] chr3 (2 HSPs)
chr3 (139-219)||(13618700-13618780)
chr3 (131-201)||(16728947-16729016)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 7982838 - 7982766
Alignment:
Q  140 agattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||    
T  7982838 agattaattagaatagactgacaatgtaaaacaactttacattatcaatcaattaaaatcacccaattagaca 7982766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 28911018 - 28910939
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||| |||| ||| |||||    
T  28911018 gagattaattagaatagactgacagtgtaaaacaaatttacactatcaaccgattaaaatcatccaattaaacacatcat 28910939  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 2357703 - 2357783
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    ||||||||||||||||||||| |||||||||||||| |||| | |||||| ||||||||||  |||||||| ||| |||||    
T  2357703 agagattaattagaatagactaacagtgtaaaacaactttagactatcaaccaattaaaattctccgattaaacacatcat 2357783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 46258635 - 46258554
Alignment:
Q  137 tagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    |||||||||||||||||||||||||| ||||||| || |||||| |||||| |||||| ||| |||  |||||||| |||||    
T  46258635 tagagattaattagaatagactgacaatgtaaaataactttacactatcaaccaattataattatctcattagacacatcat 46258554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 46029738 - 46029816
Alignment:
Q  140 agattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    ||||||||||||||||||||||  |||||||||| |||||| |||||| |||||| ||| |||  |||||||| |||||    
T  46029738 agattaattagaatagactgacgatgtaaaacaactttacactatcaaccaattataattatctcattagacacatcat 46029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 47806519 - 47806597
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatca 217  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||   |||| ||||||||||||  | |||| ||||||||    
T  47806519 agagtttaattagaatagactgacagcgtaaaacaa-tttacaccgtcaaccaattaaaatcactcaattaaacatatca 47806597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 28909872 - 28909904
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaa 170  Q
    |||||||||||||||||||||||| ||||||||    
T  28909872 agagattaattagaatagactgacggtgtaaaa 28909904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 42733585 - 42733653
Alignment:
Q  133 attatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcat 201  Q
    |||| |||| ||||||||||||  |||||| |||||||  |||||||| | |||| |||||||||||||    
T  42733585 attaaagagtttaattagaatactctgacattgtaaaattattttacactgtcaaccaattaaaatcat 42733653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 54182497 - 54182553
Alignment:
Q  142 attaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaat 198  Q
    |||||||||||||  || |||||||||||| | ||||||||||||| |||| |||||    
T  54182497 attaattagaatactctaacagtgtaaaaccactttacattatcaaccaatcaaaat 54182553  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 3868180 - 3868240
Alignment:
Q  140 agattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatca 200  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||    
T  3868180 agattaattagaatagactgacagtgtaaaacaattttgcactatcaaccaattaaaatca 3868240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 36719058 - 36718979
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||| |||||| |||||||| |||||    
T  36719058 agagattaattagaatagactgaca-tgtaaaacaattttacaccatcaaccaattaaattcatccaattagacacatcat 36718979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 6222405 - 6222332
Alignment:
Q  14 agatgaacttgtccttgcatttactaatctaaaaaatagttactcgatcacatgttttttaatagattgtcatat 88  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||| || |||||||||||    
T  6222405 agatgaacttgtccttgcatttacttatct-aaaaatagttactcaatcacatgcttttttatggattgtcatat 6222332  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 36718242 - 36718285
Alignment:
Q  137 tagagattaattagaatagactgacagtgtaaaacaattttaca 180  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  36718242 tagagattaattagaatagactgacattgtaaaacaattttaca 36718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 6222333 - 6222295
Alignment:
Q  130 attattatagagattaattagaatagactgacagtgtaa 168  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  6222333 attattatagagattaattagaatagaatgacaatgtaa 6222295  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 35413579 - 35413658
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||| |||||| |||| ||| |||||    
T  35413579 gagattaattagaatagactaacagtgtaaaacaactttacactatcaaccaattaaattcatccaattaaacacatcat 35413658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 16215994 - 16216038
Alignment:
Q  173 attttacattatcaatcaattaaaatcatccgattagacatatca 217  Q
    ||||||||||||||||||||||||| ||| | |||||||| ||||    
T  16215994 attttacattatcaatcaattaaaaccattcaattagacacatca 16216038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 2413215 - 2413281
Alignment:
Q  142 attaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgatta 208  Q
    ||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||| ||||    
T  2413215 attaattagaatagactgacagtgtaaaataaatttacattgtcgatcaattaaaatcatccaatta 2413281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 23074804 - 23074869
Alignment:
Q  147 ttagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||| || ||||||||    
T  23074804 ttagaatagactgagaatgtaaaacaattttacattatcaaccaattaaaatcacccaattagaca 23074869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 2414443 - 2414380
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcat 201  Q
    |||||||||||| |||||||||||||||||||| || |||||||| |||| |||||||||||||    
T  2414443 agagattaattataatagactgacagtgtaaaataagtttacattgtcaaccaattaaaatcat 2414380  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 14949023 - 14949103
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    |||||||||||| ||||||| ||||  |||||||||||||||||||||||  |||||||||||| | |||||||| |||||    
T  14949023 agagattaattaaaatagaccgacaaagtaaaacaattttacattatcaactaattaaaatcatacaattagacacatcat 14949103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 18527048 - 18527127
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    |||||||||||||||||||| ||||||  |||||| |||||| |||||| ||||||||||||| | |||||||| |||||    
T  18527048 gagattaattagaatagactaacagtgcgaaacaactttacactatcaaccaattaaaatcattcaattagacacatcat 18527127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 270698 - 270628
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgatta 208  Q
    ||||||||||||||||||||| || |||||||| || |||||| |||||| ||||||||||||||| ||||    
T  270698 agagattaattagaatagactaacggtgtaaaataagtttacactatcaaacaattaaaatcatccaatta 270628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 14939006 - 14939080
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    |||||||||||||||||||  |||| ||||||||||||||||| ||||||  |||||||||||| | ||||||||    
T  14939006 agagattaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagaca 14939080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 14944250 - 14944324
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    |||||||||||||||||||  |||| ||||||||||||||||| ||||||  |||||||||||| | ||||||||    
T  14944250 agagattaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagaca 14944324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 50616369 - 50616295
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    ||||||||||||||||| | ||| |||||||||||| |||||| |||||| ||||||||||||||  ||||||||    
T  50616369 agagattaattagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagaca 50616295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 50624197 - 50624123
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagaca 212  Q
    ||||||||||||||||| | ||| |||||||||||| |||||| |||||| ||||||||||||||  ||||||||    
T  50624197 agagattaattagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagaca 50624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14940494 - 14940427
Alignment:
Q  131 ttattatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaat 198  Q
    |||||| ||||||||||||||||| ||||||||| ||||| || | |||| |||||| ||||||||||    
T  14940494 ttattagagagattaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaat 14940427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14950501 - 14950434
Alignment:
Q  131 ttattatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaat 198  Q
    |||||| ||||||||||||||||| ||||||||| ||||| || | |||| |||||| ||||||||||    
T  14950501 ttattagagagattaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaat 14950434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14954742 - 14954675
Alignment:
Q  131 ttattatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaat 198  Q
    |||||| ||||||||||||||||| ||||||||| ||||| || | |||| |||||| ||||||||||    
T  14954742 ttattagagagattaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaat 14954675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 42105656 - 42105719
Alignment:
Q  138 agagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatc 202  Q
    ||||||||||| || |||||||||| |||||||||| |||||| | |||| ||||||||||||||    
T  42105656 agagattaattgga-tagactgacaatgtaaaacaagtttacactgtcaaccaattaaaatcatc 42105719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 1547703 - 1547739
Alignment:
Q  164 tgtaaaacaattttacattatcaatcaattaaaatca 200  Q
    |||||||||| |||||| |||||||||||||||||||    
T  1547703 tgtaaaacaactttacactatcaatcaattaaaatca 1547739  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 4175923 - 4175861
Alignment:
Q  135 tatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaa 197  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| | |||  |||||||||    
T  4175923 tatagagattaatttgaatagactgacagtgtaaaacaactttacactgtcagccaattaaaa 4175861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 16939173 - 16939112
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatca 200  Q
    ||||||||||||||||||  || ||||||||||||||||||| | |||| ||||||||||||    
T  16939173 gagattaattagaatagatcgatagtgtaaaacaattttacactgtcaaccaattaaaatca 16939112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 8790540 - 8790619
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcat 218  Q
    |||||||||||||||| ||||| | ||||||| || |||||| |||||||| |||| ||||| || |||||||| |||||    
T  8790540 gagattaattagaatatactgataatgtaaaataactttacactatcaatcgattagaatcacccaattagacacatcat 8790619  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 13618780 - 13618700
Alignment:
Q  139 gagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcatccgattagacatatcatt 219  Q
    |||||||||||||||||| |||||||||||||||| ||||||  |||||  | ||||| |||| | ||||||||| |||||    
T  13618780 gagattaattagaatagattgacagtgtaaaacaactttacaccatcaactagttaaactcattcaattagacatgtcatt 13618700  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 16729016 - 16728947
Alignment:
Q  131 ttattatagagattaattagaatagactgacagtgtaaaacaattttacattatcaatcaattaaaatcat 201  Q
    |||||| |||||||||||| |||||| |||||||||||||||| |||||| | || | |||||||||||||    
T  16729016 ttattaaagagattaattaaaatagattgacagtgtaaaacaactttacactgtc-accaattaaaatcat 16728947  T

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