View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_high_17 (Length: 284)
Name: NF17052_high_17
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 3556816 - 3556974
Alignment:
| Q |
5 |
gatctcctcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaatt |
104 |
Q |
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| T |
3556816 |
gatctcctcgtcgagatcctttcattactttctgtgaaatctctacttcgatttagatgcgtaagtaagtcttggaacgctctaatttctgatcccaatt |
3556915 |
T |
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| Q |
105 |
ttgtgaaattccatctcaatagatcaaaatcacaaaatcaacttttcatactagtcact |
163 |
Q |
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| T |
3556916 |
ttgtgaaattccatctcaagagatcaaaatcacaaaatcaactcttcacactagtcact |
3556974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 1687292 - 1687134
Alignment:
| Q |
5 |
gatctcctcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaatt |
104 |
Q |
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| T |
1687292 |
gatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttggaacgctctaatttctgatccctttt |
1687193 |
T |
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| Q |
105 |
ttgtgaaattccatctcaatagatcaaaatcacaaaatcaacttttcatactagtcact |
163 |
Q |
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| T |
1687192 |
ttgtgaaattccatctcaagagatcaaaatcacaaaatcaacacctcacactagtcact |
1687134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 3564834 - 3564974
Alignment:
| Q |
5 |
gatctcctcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaatt |
104 |
Q |
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| T |
3564834 |
gatctcctcgccgtgatcctctcgttacttcctgtaaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaatt |
3564933 |
T |
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| Q |
105 |
ttgtgaaattccatctcaatagatcaaaatcacaaaatcaa |
145 |
Q |
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| T |
3564934 |
ttgtgaaattccatctcatgaaatcaaaatcacaaaatcaa |
3564974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 3573601 - 3573461
Alignment:
| Q |
2 |
gacgatctcctcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatccca |
101 |
Q |
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|||||||||||||| || |||||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| || | |||| ||||||| |
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| T |
3573601 |
gacgatctcctcact-agttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatccca |
3573503 |
T |
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| Q |
102 |
attttgtgaaattccatctcaatagatcaaaatcacaaaatc |
143 |
Q |
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|||| |||||||| ||||||| | ||||||||||||||||| |
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| T |
3573502 |
atttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
3573461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 3565031 - 3565100
Alignment:
| Q |
192 |
tagtgatgataaacctgaggttgattacagtatcattccataccctatacctcgtttactagataacccg |
261 |
Q |
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| T |
3565031 |
tagtgacgatgaagctgagattgattacagtatcattccatatcctatacctcgtttactcgataacccg |
3565100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 3557034 - 3557091
Alignment:
| Q |
213 |
tgattacagtatcattccataccctatacctcgtttactagataacccgccgtttacc |
270 |
Q |
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| T |
3557034 |
tgattacggtatcattccataccctataccccgtttactcgataacccgtcctttacc |
3557091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 3573380 - 3573324
Alignment:
| Q |
214 |
gattacagtatcattccataccctatacctcgtttactagataacccgccgtttacc |
270 |
Q |
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| T |
3573380 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacc |
3573324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 39380008 - 39379867
Alignment:
| Q |
2 |
gacgatctcctcaccgagatcctttcattactttctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatccca |
101 |
Q |
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|||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| || || || ||||||| || | |||| ||||||| |
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| T |
39380008 |
gacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatccca |
39379909 |
T |
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| Q |
102 |
attttgtgaaattccatctcaatagatcaaaatcacaaaatc |
143 |
Q |
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| T |
39379908 |
attttgtcaaatttcacttcaagaaattaaaatcacgaaatc |
39379867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 39379829 - 39379772
Alignment:
| Q |
213 |
tgattacagtatcattccataccctatacctcgtttactagataacccgccgtttacc |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |
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| T |
39379829 |
tgattacagtatcattccataccctatacctcgtatactcgataacccttcgtttacc |
39379772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 29866408 - 29866505
Alignment:
| Q |
36 |
ctgtaaaatctcttcttcgattcaaatgcgtgagtaaatcttggaacgctataatttgtgatcccaattttgtgaaattccatctcaatagatcaaaa |
133 |
Q |
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|||| |||||| || ||||||||| |||||| || || ||||||||| | | |||| |||| ||| ||||||||||| |||||||| ||||||||| |
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| T |
29866408 |
ctgtgaaatctattattcgattcagatgcgttagcaattcttggaacattctcatttctgattccacctttgtgaaatttcatctcaagagatcaaaa |
29866505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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