View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_high_2 (Length: 600)
Name: NF17052_high_2
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 585
Target Start/End: Original strand, 22421564 - 22422135
Alignment:
| Q |
14 |
gaactcacatgttgaaaaagtgtataataatcaccgaaataaataacacgcttcaaatccaaagcaataacagcattgaaaccttcaatcaaagccataa |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421564 |
gaactcacatgttgaaaaagtgtataataatcaccaaaataaataacacgcttcaaatccaaagcaataacagcattgaaaccttcaatcaaagccataa |
22421663 |
T |
|
| Q |
114 |
gctccacaacaattttcctactttcattcccaacaacagccttagaaatttccaatatcaaattatcctcatcatcacaaacagcaacaccaatcccagc |
213 |
Q |
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|||||||| ||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421664 |
gctccacagcaattttacgactctcattcccatcaacagtcttagaaatttccaatatcaaattatcctcatcatcacaaacagcaacaccaatcccagc |
22421763 |
T |
|
| Q |
214 |
caaagaaacattctcacctctcacaacctcctcactcactaaacccttaaaataaaccctaacaaccggactatcatcgttccgactcgtcgaacccgac |
313 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |
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| T |
22421764 |
caaagaaacactctcacctctcacactctcctcactcactaaacccttaaaataaaccctaacaaccggaccttcattgttccgcatcgtcgaacccgaa |
22421863 |
T |
|
| Q |
314 |
aaactcccttcaccaaacggtttctcaaaattatccccccatttatcccaatcctccaccggcatgttgaaaatctccgacgccattttctgatcatgaa |
413 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421864 |
gaactcccttcaccaaacggtttctcgaaattatctccccattcatcccaatccttcaccggcatgttgaaaatctccgacgccattttctgatcatgaa |
22421963 |
T |
|
| Q |
414 |
tccgacggttgagatcatctctcgcttcacgcattgctttctcgctttgcagtctgtcgttcatctcgattgccattttttcgagctcttgtagctggag |
513 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421964 |
tccgacggttgagatcgtctctcgcttcacgcattgctctctcgctttgtaatctgtcgttcatctcgattgccattttttcgagctcttgtagctggag |
22422063 |
T |
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| Q |
514 |
agagttagcgttgaaaacggagtcggagatggatgggtcttcgagaaagacggcggtggaggaggaaggttg |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22422064 |
agagttagcgttgaaaacggagtcggagatggatgggtcttcgagaaagacggcggtggaggaggaaggttg |
22422135 |
T |
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