View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_high_5 (Length: 448)
Name: NF17052_high_5
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 225828 - 226242
Alignment:
| Q |
19 |
ttaatgatgataaataagttaaattggaactctttgtgatcaattgaatgatcttctgcttcactgtgtagatgtgtccctagctttcttattgattgca |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225828 |
ttaatgatgataaataagttaaattggaactct--gtgatcaattgaatgctcttctgcttcactgtgtagatgtgtccctagctttcttattgattgca |
225925 |
T |
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| Q |
119 |
atgccaagtttnnnnnnnnnnnnnnnnnnnnccccattttcatatttcacctgcattgaaagttgaaacactccaccaaatatgaccaagagttctctaa |
218 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
225926 |
atgccaagtttaaaaaaataaaaataaaaaaccacattttcatatttcacctgcattgaaagttgaaacactgcaccaaatatgaccaagagttctctaa |
226025 |
T |
|
| Q |
219 |
tacttgtttagtcaatttgaagttcaaaagttataaactcaaatcacctttagttcagacttcaaaaattaaaatgggggattttacgaatacttaacac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
226026 |
tacttgtttagtcaatttgaagttcaaaagttataaactcaaatcacctttagttcagacttcaaaaagtaaaatggggg-ttttacgaatacttaacac |
226124 |
T |
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| Q |
319 |
ccaatgtatttctttgcttgattatgatatgatatatccttcccacaaccaaaaaatgatatatccttcctaataagtagaagtcaaagtatattaatct |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
226125 |
ccaatgtatttc-ttgcttgattatgatatgatatatccttcccacaaccaaaaaatg--atatccttcctaataagtagaagtcaaagtatattaatct |
226221 |
T |
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| Q |
419 |
agttaaaagtccaagtataat |
439 |
Q |
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||||||||||||||||||||| |
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| T |
226222 |
agttaaaagtccaagtataat |
226242 |
T |
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