View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_high_8 (Length: 362)
Name: NF17052_high_8
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_high_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 63 - 362
Target Start/End: Original strand, 43359868 - 43360169
Alignment:
| Q |
63 |
atctatattaatagggcaccgctgtcggtgatgggataagagacaatgaccaggaaaattgggtagaccctgcatctgttccgcagtgcatttcattaca |
162 |
Q |
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| T |
43359868 |
atctatattaatagggcaccgctgtcggtgatgggataagagacattgaccaggaaaattgggtagaccctgcatctgttccgcggtgcatttcattaca |
43359967 |
T |
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| Q |
163 |
ccttaaaacttgcacactgtggtacttcagaggccaacatggtgaggttcagttagtaacatacattcttaataatgcaagagttttgcaaactatgaaa |
262 |
Q |
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| T |
43359968 |
ccttaaaacttgcacactttggtacttcagaggccaacatggtgaggttcagttagcaacatacattcttaataatgcaagagttttgcaaactatgaaa |
43360067 |
T |
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| Q |
263 |
atttgttgctgtgatagcctcaaaaaagaaagagaagtatcct--tatgctcaaaggcctctcctacatgtgaacttatttttcatgtgttcaagtgaca |
360 |
Q |
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| T |
43360068 |
atttgttgctgtgatagcctcaaaaaagaaagagaagtatccttatatgctcaaaggcctctcctacatgtgaacttatttttcatgtgttcaagtgaca |
43360167 |
T |
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| Q |
361 |
tt |
362 |
Q |
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| T |
43360168 |
tt |
43360169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 17641287 - 17641098
Alignment:
| Q |
108 |
atgaccaggaaaattgggtagaccctgcatctgttccgcagtgcatttcattacaccttaaaacttgcacactgtggtacttcagaggccaacatggtga |
207 |
Q |
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| T |
17641287 |
atgaccaagaaaattgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcga |
17641188 |
T |
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| Q |
208 |
ggttcagttagtaacatacattcttaataatgcaagagttttgcaaactatgaaaatttgttgctgtgatagcctcaaaaaagaaagaga |
297 |
Q |
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| T |
17641187 |
gcttctattggcaagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagaga |
17641098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 43362372 - 43362480
Alignment:
| Q |
236 |
aatgcaagagttttgcaaactatgaaaatttgttgctgtgatagcctcaaaaaagaaagagaagtatccttatgctcaaaggcctctcctacatgtgaac |
335 |
Q |
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| T |
43362372 |
aatgcaagagttttgcaacc-atggaaatctattgcagtgacgaactcaaactagaaagagaattgtccttatgtccaagggcctctcctacatgtgaag |
43362470 |
T |
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| Q |
336 |
ttatttttca |
345 |
Q |
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| T |
43362471 |
ttattattca |
43362480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 1333287 - 1333250
Alignment:
| Q |
139 |
tgttccgcagtgcatttcattacaccttaaaacttgca |
176 |
Q |
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| T |
1333287 |
tgttccgcagtgcctttcattacaccttacaacttgca |
1333250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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