View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17052_low_1 (Length: 841)

Name: NF17052_low_1
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17052_low_1
NF17052_low_1
[»] chr2 (8 HSPs)
chr2 (114-226)||(32270508-32270620)
chr2 (305-410)||(32270692-32270797)
chr2 (474-571)||(37440439-37440536)
chr2 (474-553)||(9612443-9612522)
chr2 (256-312)||(32270618-32270674)
chr2 (1-57)||(32270451-32270507)
chr2 (417-472)||(32271361-32271416)
chr2 (474-622)||(27410037-27410186)
[»] chr7 (12 HSPs)
chr7 (474-625)||(21496710-21496861)
chr7 (474-564)||(15964181-15964271)
chr7 (417-472)||(32089282-32089337)
chr7 (417-472)||(32096755-32096810)
chr7 (417-472)||(39128509-39128564)
chr7 (417-472)||(39478481-39478536)
chr7 (417-472)||(41706646-41706701)
chr7 (417-472)||(41812185-41812240)
chr7 (417-472)||(32087927-32087982)
chr7 (417-472)||(32093039-32093094)
chr7 (474-548)||(29915719-29915793)
chr7 (474-560)||(21688755-21688843)
[»] chr3 (8 HSPs)
chr3 (474-626)||(41073340-41073492)
chr3 (474-570)||(35092167-35092263)
chr3 (417-472)||(38044538-38044593)
chr3 (417-472)||(48838011-48838066)
chr3 (417-472)||(50152378-50152433)
chr3 (417-472)||(50904010-50904065)
chr3 (494-546)||(11193429-11193481)
chr3 (512-568)||(35085275-35085330)
[»] chr6 (6 HSPs)
chr6 (474-568)||(32089838-32089932)
chr6 (474-626)||(31393223-31393376)
chr6 (475-617)||(21279614-21279756)
chr6 (474-570)||(31895014-31895110)
chr6 (417-472)||(26217251-26217306)
chr6 (499-548)||(31202372-31202421)
[»] scaffold0259 (1 HSPs)
scaffold0259 (474-571)||(7182-7279)
[»] chr1 (8 HSPs)
chr1 (473-561)||(6165505-6165593)
chr1 (505-622)||(13120230-13120347)
chr1 (474-571)||(2620001-2620098)
chr1 (474-622)||(46545099-46545248)
chr1 (490-569)||(19025094-19025172)
chr1 (417-472)||(31141965-31142020)
chr1 (515-568)||(27906186-27906239)
chr1 (474-521)||(25080316-25080363)
[»] chr5 (4 HSPs)
chr5 (474-626)||(19287988-19288140)
chr5 (478-552)||(22962836-22962910)
chr5 (474-622)||(17528383-17528527)
chr5 (473-570)||(7653228-7653325)
[»] chr4 (15 HSPs)
chr4 (474-571)||(29515255-29515352)
chr4 (632-764)||(11907900-11908031)
chr4 (474-622)||(4986334-4986482)
chr4 (483-595)||(11907430-11907542)
chr4 (474-622)||(1937745-1937889)
chr4 (474-571)||(36892236-36892333)
chr4 (474-571)||(26095285-26095378)
chr4 (474-570)||(52627366-52627462)
chr4 (474-535)||(17523412-17523473)
chr4 (474-622)||(31978536-31978685)
chr4 (179-240)||(12887699-12887759)
chr4 (512-569)||(36154531-36154588)
chr4 (756-808)||(6629834-6629886)
chr4 (474-525)||(4889926-4889977)
chr4 (474-545)||(18196270-18196341)
[»] chr8 (8 HSPs)
chr8 (473-622)||(41378396-41378545)
chr8 (474-620)||(18887620-18887766)
chr8 (417-472)||(21634823-21634878)
chr8 (474-569)||(37095815-37095910)
chr8 (483-543)||(22014011-22014071)
chr8 (505-552)||(6731777-6731824)
chr8 (417-472)||(5515538-5515593)
chr8 (505-552)||(6651381-6651428)
[»] scaffold0169 (1 HSPs)
scaffold0169 (474-626)||(27481-27634)
[»] scaffold0856 (1 HSPs)
scaffold0856 (417-472)||(4906-4961)
[»] scaffold0002 (1 HSPs)
scaffold0002 (474-545)||(284705-284776)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 32270508 - 32270620
Alignment:
Q  114 aactattcaataattaaaaacaaaggtttgaaaaagaagaagtacttgatcttgaatgattaaaaaagaagtttcaacacaaagggacaactttaaaaag 213  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32270508 aactattcaataattaaaagcaaaggattgaaaaagaagaagtacttgatcttgaatgattaaaaaagaagtttcaacacaaagggacaactttaagaag 32270607  T
Q  214 tggaaagaatctc 226  Q
    |||||||| ||||    
T  32270608 tggaaagagtctc 32270620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 32270692 - 32270797
Alignment:
Q  305 atacagctacctcctgcatcataattacagtaagatgtttgatatacccctatatgagtgtatatacacctaaaaagattaaaagataagagagaatgat 404  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  32270692 atacggctacctcctgcagcataattacaataagatgtttgatatacgcctatctgagtgtatatacacctaaaaagattaatagataagagagaatgat 32270791  T
Q  405 atgata 410  Q
    ||||||    
T  32270792 atgata 32270797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 37440439 - 37440536
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    |||||||||||||  ||| ||| ||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37440439 actacaagaattcctcaatttactaaccaattcaaaattgcattacttagggatttagaccctcggtaattactgacggaataaaccttcagtaacat 37440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 9612443 - 9612522
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacgga 553  Q
    |||||||||||||||||||||| ||||||| | |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  9612443 actacaagaattctccaaattactaaccaatttaaaattgcattagtgagggatttaaaccgtcagtaattactgacgga 9612522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 32270618 - 32270674
Alignment:
Q  256 ctcataacactttatctttgtttctttgcaaatttgctctttcaaaatcatacagct 312  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32270618 ctcataacactttatctttgtttctttgcatatttgctctttcaaaatcatacagct 32270674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32270451 - 32270507
Alignment:
Q  1 taattgagttcggcatattaaattgagttcggcaggttattgaatcaagacagacat 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  32270451 taattgagttcagcagattaaattgagttcggcaggttattgaatcaagacagacat 32270507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 32271361 - 32271416
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  32271361 ttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaat 32271416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 622
Target Start/End: Complemental strand, 27410186 - 27410037
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat-n 572  Q
    ||||||||||||| |   |||| | ||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |  |||||| |||||||  |      
T  27410186 actacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgtaa 27410087  T
Q  573 nnnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
           ||||||||||  |||||||||||||||||||| ||||||||||    
T  27410086 tagaaaaccctcaataacattactgacggaataaaccctcaataattcag 27410037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 474 - 625
Target Start/End: Complemental strand, 21496861 - 21496710
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||      
T  21496861 actacaagaattctctaaattagtaaccaactcaaaattgcattactgagggatttagaccctcaataattactggcggaataaaccttcaataacataa 21496762  T
Q  574 nnnnngccctcaataatgttactgacggaataaacccttaataattcagaga 625  Q
          ||||||||||||||| || | ||| ||||||| |||||||||||||    
T  21496761 aaaagaccctcaataatgttattggcagaaaaaaccctcaataattcagaga 21496710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 15964181 - 15964271
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttca 564  Q
    ||||||||||||| |||| ||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||    
T  15964181 actacaagaattccccaatttactaaccaattcaaaattgcattacttagggatttagaccctcattaattactgatggaataacccttca 15964271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 32089282 - 32089337
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  32089282 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 32089337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 32096755 - 32096810
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  32096755 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 32096810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 39128509 - 39128564
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  39128509 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 39128564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 39478536 - 39478481
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  39478536 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 39478481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 41706646 - 41706701
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  41706646 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 41706701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 41812240 - 41812185
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  41812240 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 41812185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 32087927 - 32087982
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||    
T  32087927 ttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaat 32087982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 32093039 - 32093094
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  32093039 ttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaat 32093094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 548
Target Start/End: Complemental strand, 29915793 - 29915719
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactg 548  Q
    ||||||||||||| |   |||| | ||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  29915793 actacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactg 29915719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 560
Target Start/End: Complemental strand, 21688843 - 21688755
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaa--ttactgacggaataaacc 560  Q
    ||||||||||||   ||||||| ||||||| |||||||||||||||||||| ||||| ||||||| |||   |||||| ||||||||||    
T  21688843 actacaagaatttctcaaattactaaccaattcaaaattgcattactgaggcatttaaaccctcaataacgctactgaaggaataaacc 21688755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 474 - 626
Target Start/End: Original strand, 41073340 - 41073492
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||| ||||  || |||||||  ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||      
T  41073340 actacaagaattccccaatatactaaccaatccaatattgcattactgtgggatttagaccctcagtaattactggcggaataaaccttcaataacattc 41073439  T
Q  574 nnnnngccctcaataatgttactgacggaataaacccttaataattcagagag 626  Q
          |||||||||| ||||||||||||| || |||| ||||||||||||||    
T  41073440 aaaaaaccctcaataacgttactgacggaacaatccctcaataattcagagag 41073492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 570
Target Start/End: Complemental strand, 35092263 - 35092167
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaaca 570  Q
    ||||||||||||  |||| ||| ||||||| ||||||||||||||| |||||||||||||||||||| || | || |||||||| || | |||||||    
T  35092263 actacaagaatttcccaatttactaaccaattcaaaattgcattaccgagggatttagaccctcagtgatcattggcggaataaccccttagtaaca 35092167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 38044538 - 38044593
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  38044538 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 38044593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 48838066 - 48838011
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  48838066 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 48838011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 50152433 - 50152378
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  50152433 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 50152378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 50904065 - 50904010
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  50904065 ttgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaat 50904010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 11193429 - 11193481
Alignment:
Q  494 tattaaccaactcaaaattgcattactgagggatttagaccctcagtaattac 546  Q
    |||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||    
T  11193429 tattaaccaattcaaaattgtattaccgagagatttagaccctcagtaattac 11193481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 35085330 - 35085275
Alignment:
Q  512 tgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaa 568  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| || |||||||    
T  35085330 tgcattactgagggatt-attccctcagtaattactgacggaataatccctcagtaa 35085275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 474 - 568
Target Start/End: Original strand, 32089838 - 32089932
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaa 568  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||| |||||||    
T  32089838 actacaagaattctccaaattactaaccaactcaaaattgcattactgagggatttagatcctcagtgattactgacggagtacaccctcagtaa 32089932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 474 - 626
Target Start/End: Complemental strand, 31393376 - 31393223
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||| ||||  || |||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||      
T  31393376 actacaagaattccccaatatactaaccaatccaatattgcattactgagggatttagaccctcagtaattactggcggaataaaccttcaataacattc 31393277  T
Q  574 nnnnngccct-caataatgttactgacggaataaacccttaataattcagagag 626  Q
          |||| |||||| ||||||||||||| || |||| ||||||||||||||    
T  31393276 aaaaaaccctacaataacgttactgacggaacaatccctcaataattcagagag 31393223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 475 - 617
Target Start/End: Complemental strand, 21279756 - 21279614
Alignment:
Q  475 ctacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnnn 574  Q
    |||||||||||| | || ||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||       
T  21279756 ctacaagaattcccaaatttactaatcaattcaaaattacattactgagggatttagaccctcagtaattactggtggaataaaccttcagtaacatcca 21279657  T
Q  575 nnnngccctcaataatgttactgacggaataaacccttaataa 617  Q
         |||||||||| ||||||||||||| || |||| |||||    
T  21279656 aaaaaccctcaataacgttactgacggaaaaatccctcaataa 21279614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 474 - 570
Target Start/End: Original strand, 31895014 - 31895110
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaaca 570  Q
    |||||||||||||  ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31895014 actacaagaattcatcaatttaccaaccaattcaaaattgcattattgagggatttagaccctcagtaattactgacggaataacccttcagtaaca 31895110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 26217251 - 26217306
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  26217251 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 26217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 548
Target Start/End: Original strand, 31202372 - 31202421
Alignment:
Q  499 accaactcaaaattgcattactgagggatttagaccctcagtaattactg 548  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  31202372 accaaatcaaaattgcattactgacggatttagacccttagtaattactg 31202421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 7182 - 7279
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    ||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  7182 actacaagaattccccaatatattaaccaattcaaaattgcattactgagggatttagactctcagtaattactggcggaataaaccttcaataacat 7279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 473 - 561
Target Start/End: Complemental strand, 6165593 - 6165505
Alignment:
Q  473 aactacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaacct 561  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  6165593 aactacaagaattctccaaattactaaccaattcaaaattgcatcactgagggatttaggccctcagtaattactgacggaacaaacct 6165505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 505 - 622
Target Start/End: Original strand, 13120230 - 13120347
Alignment:
Q  505 tcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnnnnnnngccctcaataatgttactgacggaat 604  Q
    ||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||| ||||||        ||||||||||||||||||||||||     
T  13120230 tcaaaattgcatacatgagggatttagaccctcagtaattactggcggaataaaccttcaataacatccaaaaaaccctcaataatgttactgacggaaa 13120329  T
Q  605 aaacccttaataattcag 622  Q
    || |||| ||||||||||    
T  13120330 aatccctcaataattcag 13120347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 2620001 - 2620098
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    ||||||||||||| ||||  || |||||||  ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  2620001 actacaagaattccccaatatactaaccaatccaatattgcattattgagggatttagaccctcagtaattactggcggaataaaccttcaataacat 2620098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 474 - 622
Target Start/End: Original strand, 46545099 - 46545248
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    |||||||||||||  ||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||       
T  46545099 actacaagaattcctcaatttactaaccaattcaaaattgcattactgagggatttagaccctctgtatttactggcggaataaatcttcggtaacaaca 46545198  T
Q  574 nnnnngc-cctcaataatgttactgacggaataaacccttaataattcag 622  Q
            ||||||||||||||||||| ||| ||||||| ||||||||||    
T  46545199 aaaaaaaacctcaataatgttactgacagaaaaaaccctcaataattcag 46545248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 19025094 - 19025172
Alignment:
Q  490 aaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaac 569  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||    
T  19025094 aaattactaaccaactcaaaattgcattactgagggatttagatcctcaataattac-gacagaataaaccttcaataac 19025172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 31141965 - 31142020
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  31141965 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 31142020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 27906239 - 27906186
Alignment:
Q  515 attactgagggatttagaccctcagtaattactgacggaataaaccttcagtaa 568  Q
    |||| ||| ||||||||||| | || ||||||||||||||||||||||||||||    
T  27906239 attattgatggatttagaccttaagaaattactgacggaataaaccttcagtaa 27906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 521
Target Start/End: Complemental strand, 25080363 - 25080316
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactg 521  Q
    |||||||||| ||||||||||| |||||||  ||||||||||||||||    
T  25080363 actacaagaagtctccaaattactaaccaatccaaaattgcattactg 25080316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 474 - 626
Target Start/End: Complemental strand, 19288140 - 19287988
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    |||||||||||||  | | ||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||       
T  19288140 actacaagaattcctctatttactaatcaattcaaaattacattactgagggatttagaccctcagtaattactgacggaataatccatcagtaacaaca 19288041  T
Q  574 nnnnngccctcaataatgttactgacggaataaacccttaataattcagagag 626  Q
          |||||||||||||||||||||||  ||||||| |||||||| |||||    
T  19288040 aaaaaaccctcaataatgttactgacggataaaaccctcaataattctgagag 19287988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 22962836 - 22962910
Alignment:
Q  478 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacgg 552  Q
    |||||||||||||||||| |||| || |||||||||||||| |||| |||||| ||| ||| |||||||||||||    
T  22962836 caagaattctccaaattactaactaattcaaaattgcattaatgagagatttaaaccttcaataattactgacgg 22962910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 622
Target Start/End: Complemental strand, 17528527 - 17528383
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat-n 572  Q
    ||||| ||||||| |||| ||| ||||||| |||||||||||||||||||||||||     ||||||||||||||  ||||||||| |||| ||| ||      
T  17528527 actaccagaattccccaatttactaaccaattcaaaattgcattactgagggattt-----ctcagtaattactggtggaataaactttcaataatatcc 17528433  T
Q  573 nnnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
           |||||||||| ||||||||||||| || |||| ||||||||||    
T  17528432 aaaaaaaccctcaataaagttactgacggaaaaatccctcaataattcag 17528383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 570
Target Start/End: Complemental strand, 7653325 - 7653228
Alignment:
Q  473 aactacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaaca 570  Q
    |||||||||||||| ||| || |   || ||||||||| |||||||||||  ||||||||||||||  |||||||||||   |||||| |||||||||    
T  7653325 aactacaagaattcaccatatcagcgacaaactcaaaactgcattactgacagatttagaccctcaaaaattactgacgatctaaaccctcagtaaca 7653228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 29515352 - 29515255
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    |||||||||||||  ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29515352 actacaagaattcctcaatttactaaccaattcaaaattacattactgagggatttagaccctcagtaattactggcggaataaaccttcaataacat 29515255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 632 - 764
Target Start/End: Original strand, 11907900 - 11908031
Alignment:
Q  632 ttattgatggattttaatccgtcactaatgtttggcgaattgaaaaaaccgccggtaccnnnnnnnnnaacacgcaaacacgatacacactcactcttct 731  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||| ||||| | |||||         ||||| |||||||| ||||| |||||||||||    
T  11907900 ttattgacggaatttaatccgtcactaatgttaggcgaattgaaagaaccgacagtacccttttttt-aacacacaaacacggtacaccctcactcttct 11907998  T
Q  732 ctctcgccgatctctgcttcctctcttcacctt 764  Q
    ||||||||||||||||| ||| |||||||||||    
T  11907999 ctctcgccgatctctgcctcccctcttcacctt 11908031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 622
Target Start/End: Original strand, 4986334 - 4986482
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||| |||| ||| ||||||| |||||||  ||||| ||||||||||||||||| | ||||||||| ||||||||||||||| || |||      
T  4986334 actacaagaattccccaatttactaaccaattcaaaatgacattagtgagggatttagacccttaataattactggcggaataaaccttcaatagcatcc 4986433  T
Q  574 nnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
          |||||||||| ||||||||||| | |  |||| ||||||||||    
T  4986434 aaaaaaccctcaataacgttactgacggcaaattccctcaataattcag 4986482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 11907430 - 11907542
Alignment:
Q  483 attctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnnnnnnngccc 582  Q
    |||| |||||||| ||||||| |||||||||||||||| | | ||||||||| |||||||||||||||| |||||||||| |||| |||       ||||    
T  11907430 attccccaaattactaaccaattcaaaattgcattactcaagaatttagaccatcagtaattactgacgaaataaacctttagtatcataaagaaagccc 11907529  T
Q  583 tcaataatgttac 595  Q
    |||||||||||||    
T  11907530 tcaataatgttac 11907542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 474 - 622
Target Start/End: Complemental strand, 1937889 - 1937745
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||| |||| ||| ||||||| | |||||||||||||||||||  |    |||||||||||||||| ||||||||||||||| ||||||      
T  1937889 actacaagaattccccaatttactaaccaatttaaaattgcattactgagggtct----ccctcagtaattactggcggaataaaccttcaataacatct 1937794  T
Q  574 nnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
          | |||||||| ||||||||||||| || |||| ||||||||||    
T  1937793 aaaaaactctcaataacgttactgacggaaaaatccctcaataattcag 1937745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 36892236 - 36892333
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    |||||||||||||  ||||||  ||||||| |||||||| ||||||||||| ||||||||||||| |||| ||||| |||||||| ||||| ||||||    
T  36892236 actacaagaattcctcaaatttctaaccaaatcaaaattacattactgaggaatttagaccctcaataatcactgaaggaataaaacttcaataacat 36892333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 26095378 - 26095285
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat 571  Q
    ||||||||||||| ||||  || ||||||| ||||||||||||||||||    ||||||||||| |||||||||  ||||||||||||||||||||||    
T  26095378 actacaagaattccccaatctactaaccaattcaaaattgcattactga----tttagaccctctgtaattactagcggaataaaccttcagtaacat 26095285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 474 - 570
Target Start/End: Original strand, 52627366 - 52627462
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaaca 570  Q
    |||| |||||||| || | ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||| || | |||||||    
T  52627366 actataagaattcccctatttactaaccaattcaaaattgcattaccgagggatttagaccctcagtaattactagcggaataaccccttagtaaca 52627462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 535
Target Start/End: Complemental strand, 17523473 - 17523412
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccc 535  Q
    |||||||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  17523473 actacaagaattcctcaaattactaaccaaatcaaaattacattactgagggatttagaccc 17523412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 622
Target Start/End: Original strand, 31978536 - 31978685
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacat-n 572  Q
    ||||||||||||| |   |||| | ||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |  |||||| |||||||  |      
T  31978536 actacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgtaa 31978635  T
Q  573 nnnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
           ||||||||||  |||||||||||||||||||| ||||||||||    
T  31978636 tagaaaaccctcaataacattactgacggaataaaccctcaataattcag 31978685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 12887759 - 12887699
Alignment:
Q  179 aagaagtttcaacacaaagggacaactttaaaaagtggaaagaatctctatgttttccattt 240  Q
    |||||||| ||||||||| | |||||||||| |||| |||||||||||||||||||||||||    
T  12887759 aagaagttccaacacaaaag-acaactttaataagttgaaagaatctctatgttttccattt 12887699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 36154531 - 36154588
Alignment:
Q  512 tgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaac 569  Q
    |||||||||||||||||||| || ||||||||||||| ||| ||||||| ||||||||    
T  36154531 tgcattactgagggatttaggccttcagtaattactggcggtataaaccatcagtaac 36154588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 808
Target Start/End: Original strand, 6629834 - 6629886
Alignment:
Q  756 cttcacctttgcagtttgctctcgccacccatcaccaccacgatacaaacatc 808  Q
    |||||||||  || ||| |||||||||||||||||||||||||| ||||||||    
T  6629834 cttcaccttcacaattttctctcgccacccatcaccaccacgatgcaaacatc 6629886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 4889977 - 4889926
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgaggg 525  Q
    ||||||||||||| |||| ||| ||||||| |||||||||||||||| ||||    
T  4889977 actacaagaattccccaatttactaaccaattcaaaattgcattactaaggg 4889926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 18196341 - 18196270
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaatta 545  Q
    |||||||||||||  ||||||| ||||||| | |||||||||||||||| || |||  ||||||| ||||||    
T  18196341 actacaagaattcatcaaattagtaaccaattgaaaattgcattactgacgggtttgaaccctcattaatta 18196270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 473 - 622
Target Start/End: Original strand, 41378396 - 41378545
Alignment:
Q  473 aactacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatn 572  Q
    ||||| ||||||||  |||  |||||||||| ||||||||| |||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||||     
T  41378396 aactagaagaattcctcaatatattaaccaattcaaaattgtattactaaggaatttagaccctcaataattactggcggaataaaccttcaataacatc 41378495  T
Q  573 nnnnnngccctcaataatgttactgacggaataaacccttaataattcag 622  Q
           |||||||||| ||||||||| ||| ||||||| ||||||||||    
T  41378496 caaaaaaccctcaataacgttactgacagaaaaaaccctcaataattcag 41378545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 474 - 620
Target Start/End: Complemental strand, 18887766 - 18887620
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaacatnn 573  Q
    ||||||||||||  || | ||| ||||||| |||||||||||||||| ||||||||||||| | ||||| ||||| |||||||||||| |||||||||      
T  18887766 actacaagaatttcccgatttactaaccaattcaaaattgcattacttagggatttagacctttagtaactactgccggaataaacctacagtaacataa 18887667  T
Q  574 nnnnngccctcaataatgttactgacgg--aataaacccttaataattc 620  Q
          |||||||||| |||||||||||  |||||||||| ||||||||    
T  18887666 aaaa--ccctcaataacgttactgacggaaaataaaccctcaataattc 18887620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 21634823 - 21634878
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  21634823 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaat 21634878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 569
Target Start/End: Complemental strand, 37095910 - 37095815
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaac 569  Q
    ||||||||||||| || |||||| ||  || |||| |||||||||||| ||||||||| || ||||||||||||| ||| ||||||| ||||||||    
T  37095910 actacaagaattcccctaattatcaaggaattcaagattgcattactgggggatttaggccttcagtaattactggcggtataaaccctcagtaac 37095815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 483 - 543
Target Start/End: Original strand, 22014011 - 22014071
Alignment:
Q  483 attctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaat 543  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  22014011 attccccaaattactaaccaattcaaaattgaattactgagggatttaggccctcagtaat 22014071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 552
Target Start/End: Complemental strand, 6731824 - 6731777
Alignment:
Q  505 tcaaaattgcattactgagggatttagaccctcagtaattactgacgg 552  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  6731824 tcaaaattacattactgacggatttagaccctcagtaattactgacgg 6731777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 5515593 - 5515538
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||| ||||| | |||||||| ||||||||||| ||||||||||||    
T  5515593 ttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaat 5515538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 552
Target Start/End: Complemental strand, 6651428 - 6651381
Alignment:
Q  505 tcaaaattgcattactgagggatttagaccctcagtaattactgacgg 552  Q
    |||||||| ||||||||| ||||||||||||||| |||||| ||||||    
T  6651428 tcaaaatttcattactgacggatttagaccctcaataattagtgacgg 6651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 474 - 626
Target Start/End: Original strand, 27481 - 27634
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaattactgacggaataaaccttcagtaac-atn 572  Q
    ||||||||||||| || | ||| ||||||| |||||||||||||||||||| ||| ||||| ||||||||||||  |||||||| || |||||||| |      
T  27481 actacaagaattcccctatttactaaccaattcaaaattgcattactgaggaattcagaccatcagtaattactagcggaataacccatcagtaacaaca 27580  T
Q  573 nnnnnngccctcaataatgttactgacggaataaacccttaataattcagagag 626  Q
           |||||||||||||||||||| ||| ||||||| |||||||| |||||    
T  27581 aaaaaaaccctcaataatgttactgacagaaaaaaccctcaataattctgagag 27634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 4906 - 4961
Alignment:
Q  417 ttgtgcgtgtcatccttgcgtaggggccatgataatcttctctatatcgttccaat 472  Q
    |||||||||||||||||||| | |||||||| | ||||||||| |||| |||||||    
T  4906 ttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaat 4961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 545
Target Start/End: Original strand, 284705 - 284776
Alignment:
Q  474 actacaagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctcagtaatta 545  Q
    |||||||||||||  ||||||| ||||||| | |||||||||||||||| || |||  ||||||| ||||||    
T  284705 actacaagaattcatcaaattagtaaccaattgaaaattgcattactgacgggtttgaaccctcattaatta 284776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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