View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_12 (Length: 331)
Name: NF17052_low_12
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 17899597 - 17899894
Alignment:
| Q |
17 |
atgaatgcattcgaaacattttgtacatgtgaattggaattgtgtttgtgacattgtagtattattttacatatgcatcgaattgaatcatatcttaact |
116 |
Q |
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| T |
17899597 |
atgaatgcattcgaaacattttgtacgtgtgaattggaattgtgtttgtgacattgtagtattattttacatatgcatcgaatcgaatcatatcttaact |
17899696 |
T |
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| Q |
117 |
tagtttataaaatatcaacaaatatttatataaaattacttgattgatgcatttgtaaaaaagttttacactgtcggtgtatgcaaatcaaatgtgttgt |
216 |
Q |
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| T |
17899697 |
tagtttataaaatatcaacaaatatttatataaaattacttgattgatgcatttgtaaaaaagttttacattgtcggtgtatgcaaatcaaatgtgttgt |
17899796 |
T |
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| Q |
217 |
tgtagttgtggtttccatttctttcatcaaaatgtaaacaatgtttgccgatcctacataaaatacatcatttataactattgatgtgattcggaaat |
314 |
Q |
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| T |
17899797 |
tgtagttgtggtttccatttctttcatcaaaatgtgaacaacgtttgccgatcctacataaaatacatcatttataactattgatgtgattcggaaat |
17899894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 35836575 - 35836547
Alignment:
| Q |
170 |
tgtaaaaaagttttacactgtcggtgtat |
198 |
Q |
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| T |
35836575 |
tgtaaaaaagttttacactgtcggtgtat |
35836547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 35893292 - 35893264
Alignment:
| Q |
170 |
tgtaaaaaagttttacactgtcggtgtat |
198 |
Q |
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| T |
35893292 |
tgtaaaaaagttttacactgtcggtgtat |
35893264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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