View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_13 (Length: 323)
Name: NF17052_low_13
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 52531069 - 52531376
Alignment:
| Q |
1 |
tccaccttataagtgaactttctccatgacttgtatggcaacttagaaggttcaagtaattcttgagcagtgatagacatgaaagcctcaacaaacaaag |
100 |
Q |
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| T |
52531069 |
tccaccttataagtgaactttctccatgacttgtttggcaacttagaaggttcaagtaattcttgagcagtgatagacatgaaagcctcaacaaacaaag |
52531168 |
T |
|
| Q |
101 |
caccttctccattgcaatccacttcaagcttcttctcatcatccaaattagaggaacaacttctcaacctcccagctaatgggtaataatccactaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531169 |
caccttctccattgcaatccacttcaagcttcttctcatcatccaaattagaggaacaacttctcaacctcccagctaatgggtaataatccactaaaac |
52531268 |
T |
|
| Q |
201 |
tctagatagagaacacttcaaattatccaaattcacagacttcttgaaaatgtacaaatacttgatagaaaatctaaggaacttttggtcatcaagatta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531269 |
tctagatagagaacacttcaaatgatccaaattcacagacttcttgaaaatgtacaaatacttgatagaaaatctaaggaacttttggtcatcaagatta |
52531368 |
T |
|
| Q |
301 |
gaaagata |
308 |
Q |
| |
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|||||||| |
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| T |
52531369 |
gaaagata |
52531376 |
T |
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